View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_high_16 (Length: 239)
Name: NF3589_high_16
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29242785 - 29242547
Alignment:
| Q |
1 |
aaatccggtaaatacactgaactaataaattggttgcccgnnnnnnnttgtcaactttaatatatgcatgtttgtacaagatagaaaaactctatatata |
100 |
Q |
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| T |
29242785 |
aaatccggtaaatacactgaactaataaattggttgcccgaaaaaaattgtcaactttaatatatgcatgtttgtacaagatagaaaaaccctatatata |
29242686 |
T |
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| Q |
101 |
tttctcatttataaatgtgaaggtacgaatggaaagcaactgttgagttaatgaaagcatacatgtatagagagaattgactttccctatcaaagacata |
200 |
Q |
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| T |
29242685 |
tttctcatttataaatgtgaaggtacgaatggaaagcaactgttgagttaatgaaagcatacatatatagagagaattgactttccctatcaaagacata |
29242586 |
T |
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| Q |
201 |
atataaacagagtcacagagacacacattctgaatctaa |
239 |
Q |
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| T |
29242585 |
atataaacagagtcacagagacacacattctgaatctaa |
29242547 |
T |
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