View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_low_1 (Length: 433)
Name: NF3589_low_1
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 43110394 - 43109992
Alignment:
| Q |
19 |
gcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgatgaaggaaggt |
118 |
Q |
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| T |
43110394 |
gcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaatccaggttatgttgatgaaggaaggt |
43110295 |
T |
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| Q |
119 |
tgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgt |
218 |
Q |
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| T |
43110294 |
tgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgt |
43110195 |
T |
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| Q |
219 |
gaggagagaaattaattgaatacataatttcccaataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattg |
318 |
Q |
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| T |
43110194 |
gaggagagaaattaattgaatacataatttccctataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattg |
43110095 |
T |
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| Q |
319 |
tgnnnnnnntgttcaaatacttttcaattttattttgaattcaattttaacnnnnnnnngggaaagttgtctagtgcatcacgttttattatgtgttgtc |
418 |
Q |
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| T |
43110094 |
tgaaaaaaatgttcaaatacttttcaattttattttgatttcaattttaacaaaaaaagggg-aagttgtctagtgcatagctttttattctgtgttgtc |
43109996 |
T |
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| Q |
419 |
cttt |
422 |
Q |
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|||| |
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| T |
43109995 |
cttt |
43109992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 26314858 - 26314678
Alignment:
| Q |
19 |
gcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgat---gaaggaa |
115 |
Q |
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| T |
26314858 |
gcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaacactaatccaggttatgttgatgaagaaggaa |
26314759 |
T |
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| Q |
116 |
ggttgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgt |
196 |
Q |
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| T |
26314758 |
gattgagaattttgcctttctatgatctcaacaagcctcctcacacatgtaatttgtgccctccaaacatgtgcaaggtgt |
26314678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 5272479 - 5272353
Alignment:
| Q |
27 |
gtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgat---gaaggaaggttgaga |
123 |
Q |
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||||| |||||| || ||| |||||||||| || ||||| | ||| ||||||||||||||| ||||||| ||||||||| || |||||||| | ||| |
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| T |
5272479 |
gttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagattaactctaatcctggttatgttaatcaagaaggaagagttaga |
5272380 |
T |
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| Q |
124 |
attttgccttaccatgatctcaataag |
150 |
Q |
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|||| |||||||||||| |||||||| |
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| T |
5272379 |
atttcaccttaccatgatttcaataag |
5272353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 5269304 - 5269380
Alignment:
| Q |
29 |
ttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgtt |
105 |
Q |
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| T |
5269304 |
ttttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagattaacaccaatcctggttatgtt |
5269380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 5250083 - 5250208
Alignment:
| Q |
28 |
tttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgatgaa---ggaaggttgagaa |
124 |
Q |
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||||||||||| |||||| ||||| |||| || || || | || ||| | ||||||||||||||||| ||||||||| || || ||||| || |||| |
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| T |
5250083 |
tttttcattgaaacaattttgaagaatttgggaataagtgaatacttcactgagattaacactaatcctggttatgttaatcaacaaggaagattaagaa |
5250182 |
T |
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| Q |
125 |
ttttgccttaccatgatctcaataag |
150 |
Q |
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|||| |||||||||||| |||||||| |
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| T |
5250183 |
ttttaccttaccatgatttcaataag |
5250208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 5276406 - 5276332
Alignment:
| Q |
79 |
gagattaacactaatccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
150 |
Q |
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| T |
5276406 |
gagattaacactaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataag |
5276332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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