View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_low_11 (Length: 265)
Name: NF3589_low_11
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 34937978 - 34938176
Alignment:
| Q |
19 |
gtattagacttcattaatatataaacgtcatatacagtgaaacaaaaacatttttaagcaaggaattgagtcacctttaagttgtggtttccacttccgc |
118 |
Q |
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| T |
34937978 |
gtattagacttcattaatatataaacgtcatatacagtgaaacaaaaacatttttaagcaaggaa--gagtcaccttcaagttgtggtttccacttccgc |
34938075 |
T |
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| Q |
119 |
tgcaagcatgagtcctctttgatagataatttgtaaacatatttgttaacgtttattattgaaccttgagatatactctaactctaatgaatttttattt |
218 |
Q |
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| T |
34938076 |
tgcaaacatgagtcctctttgatagataatttgtaaatatatttgttaacgttcattgttgaaccttgagatatactctaactctaatgaatttttattt |
34938175 |
T |
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