View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_low_24 (Length: 211)
Name: NF3589_low_24
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 15461114 - 15461253
Alignment:
| Q |
21 |
atcgggtcacacatcatttatgtccacgaaccaagcttataagtaaggatagtcctcactttataaaccggttgtgttcgatccaaccacaatttctaaa |
120 |
Q |
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| T |
15461114 |
atcgggtcacacatcatttatgtccacgaaccaagcttataagtaaggatagtcctcactttataaaccggttgtgttagatccaaccacaatttctaaa |
15461213 |
T |
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| Q |
121 |
acctgttttcattttatttccataatttatttttaaattt |
160 |
Q |
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| T |
15461214 |
acctgatttcattttatttccataatttatttttaaattt |
15461253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 15461570 - 15461611
Alignment:
| Q |
153 |
ttaaatttactagataatctatgaagttaatttagttctttt |
194 |
Q |
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| T |
15461570 |
ttaaatttactagataatctatgaagttaatttcgttttttt |
15461611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 16704662 - 16704627
Alignment:
| Q |
21 |
atcgggtcacacatcatttatgtccacgaaccaagc |
56 |
Q |
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| T |
16704662 |
atcgggtcactcatcatttatgtccacgaaccaagc |
16704627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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