View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3589_low_3 (Length: 386)

Name: NF3589_low_3
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3589_low_3
NF3589_low_3
[»] chr3 (4 HSPs)
chr3 (180-370)||(23354433-23354624)
chr3 (10-180)||(55119254-55119423)
chr3 (2-145)||(55119111-55119254)
chr3 (148-178)||(55120511-55120541)
[»] chr7 (1 HSPs)
chr7 (180-370)||(47962799-47962990)
[»] chr4 (2 HSPs)
chr4 (226-267)||(22895214-22895255)
chr4 (226-267)||(22946882-22946923)
[»] chr5 (1 HSPs)
chr5 (209-263)||(26153251-26153305)
[»] chr2 (1 HSPs)
chr2 (209-263)||(2210371-2210426)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 180 - 370
Target Start/End: Complemental strand, 23354624 - 23354433
Alignment:
Q  180 acaataatgcttaatgttacgagaggtctttgcacgaatttagacgaatttaacgtattccttttattttcaaaatccaacaagttaaacttc--tagag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  |||||    
T  23354624 acaataatgcttaatgttacgagaggtctttgcacgaatttagacgaatttaacttattccttttattttcaaaatccagcaagttaaacttctatagag 23354525  T
Q  278 gtaaagtagaaggcaccatctgccaacaagtcttggnnnnnnngtacttcatgacatctttctcacacnnnnnnngtgattttaatatgaaat 370  Q
     |||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||       ||||||||||||||||||    
T  23354524 ataaagtagaaggcaccatctgccaacaagtcttgg-ctttttgtgcttcatgacatctttctcacactttttttgtgattttaatatgaaat 23354433  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 55119423 - 55119254
Alignment:
Q  10 atgaatgaacgaggaaaagttgattacaattagtgtaaaatgtactttatagtttatacagttatcataactaaactaacnnnnnnnncttaactaattt 109  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||        ||||||||||||    
T  55119423 atgaatgaatgaggaaaagttgattacaattagtgtaagatgtactttataatttatacagttatcataactaaactaacaaaaaaaacttaactaattt 55119324  T
Q  110 ggaactaataatgatcaacttctaactacatttaggataactctataattgaatgaatgagttttcaaaaa 180  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55119323 ggaac-aatgatgatcaacttctaactacatttaggttaactctataattgaatgaatgagttttcaaaaa 55119254  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 55119254 - 55119111
Alignment:
Q  2 aaataaaaatgaatgaacgaggaaaagttgattacaattagtgtaaaatgtactttatagtttatacagttatcataactaaactaacnnnnnnnnctta 101  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||        ||||    
T  55119254 aaataaaaatgaacgaatgaggaaaagttgattacaattagtgcaagatgtactttatagtttatacagttatcataactaaaccaacaaaaaaaactta 55119155  T
Q  102 actaatttggaactaataatgatcaacttctaactacatttagg 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  55119154 actaatttggaactaatactgatcaacttctaactacatttagg 55119111  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 55120541 - 55120511
Alignment:
Q  148 aactctataattgaatgaatgagttttcaaa 178  Q
    |||||||||||||||||||||||||||||||    
T  55120541 aactctataattgaatgaatgagttttcaaa 55120511  T

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Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 370
Target Start/End: Original strand, 47962799 - 47962990
Alignment:
Q  180 acaataatgcttaatgttacgagaggtctttgcacgaatttagacgaatttaacgtattccttttattttcaaaatccaacaagttaaacttc--tagag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  |||||    
T  47962799 acaataatgcttaatgttacgagaggtctttgcacgaatttagacgaatttaacttattccttttattttcaaaatccagcaagttaaacttctatagag 47962898  T
Q  278 gtaaagtagaaggcaccatctgccaacaagtcttggnnnnnnngtacttcatgacatctttctcacacnnnnnnngtgattttaatatgaaat 370  Q
     |||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||       ||||||||||||||||||    
T  47962899 ataaagtagaaggcaccatctgccaacaagtcttggcttttta-tgcttcatgacatctttctcacactttttttgtgattttaatatgaaat 47962990  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 22895255 - 22895214
Alignment:
Q  226 aatttaacgtattccttttattttcaaaatccaacaagttaa 267  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  22895255 aatttaaagtattccttttattttcaaaatccagcaagttaa 22895214  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 22946923 - 22946882
Alignment:
Q  226 aatttaacgtattccttttattttcaaaatccaacaagttaa 267  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  22946923 aatttaaagtattccttttattttcaaaatccagcaagttaa 22946882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 26153251 - 26153305
Alignment:
Q  209 ttgcacgaatttagacgaatt-taacgtattccttttattttcaaaatccaacaag 263  Q
    ||||||||||||||||||||  |||| ||||| |||||||||||||||||||||||    
T  26153251 ttgcacgaatttagacgaatggtaac-tattcattttattttcaaaatccaacaag 26153305  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 2210426 - 2210371
Alignment:
Q  209 ttgcacgaatttagacgaatt--taacgtattccttttattttcaaaatccaacaag 263  Q
    ||||||||||||||||||||   |||| ||||| |||||||||||||||||||||||    
T  2210426 ttgcacgaatttagacgaatgggtaac-tattcattttattttcaaaatccaacaag 2210371  T

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