View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3589_low_4 (Length: 383)
Name: NF3589_low_4
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 8031225 - 8030881
Alignment:
| Q |
12 |
agagaggaattgtgatattaacatacccatctggatatacatttcccttaattgagtaaacaagagaagaaatgagggaatgtatagaagttggggggat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031225 |
agagaggaattgtgatattaacatacccatctggatatacatttcccttaattgtgtaaacaagagaagaaatgagggaatgtatagaagttggggggat |
8031126 |
T |
|
| Q |
112 |
tgaattattcttatggatgagttgattggctgctgagaaatgatgaggaaaaatagaagaaagtaatagaaagagtgaaaatgttatcaatgaaactcct |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
8031125 |
tgaattattcttat------------tggctgctgagaaatgatgaggaaaaatagaagaaagtaatagaaagagtgaaaatgctatcaatgaaaatcct |
8031038 |
T |
|
| Q |
212 |
ctatttttcacatccatattcaataaatcaatggaaaagagattgaattttggttatggagctcaacgttgtctcaatggtttatttatatagaaaatta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031037 |
ctatttttcacatccatattcaataaatcaatggaaaagagattgaattttggatatggagctcaacgttgtctcaatggtttatttatatagaaaatta |
8030938 |
T |
|
| Q |
312 |
aacgagtgtggtaca---tcttcaatgtgagaaaattttgtccattttagtgcgaat |
365 |
Q |
| |
|
|| ||||| | |||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
8030937 |
aaggagtgcgttacatcttcttcaatgtgagaaaattttgtccatttgagtgtgaat |
8030881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 8021163 - 8020831
Alignment:
| Q |
16 |
aggaattgtgatattaacatacccatctggatatacatttcccttaattgagtaaacaagagaagaaatgagggaatgtatagaagttggggggattgaa |
115 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8021163 |
aggatttgtgatattaacgtacccatctggatatacatttcccttaattgtgtaaacaagagaagaaatgagggaatgtatagaagttggggggattgaa |
8021064 |
T |
|
| Q |
116 |
ttattcttatggatgagttgattggctgctgagaaatgatgaggaaaaatagaagaaagtaatagaaagagtgaaaatgttatcaatgaaactcctctat |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8021063 |
ttattcttat------------tggctgctgagaaatgatgaggaaaaatagaagaaagtaatagaaagagtgaaaatgttatcaatgaaactcctctat |
8020976 |
T |
|
| Q |
216 |
ttttcacatccatattcaataaatcaatggaaaagagattgaattttggttatggagctcaacgttgtctcaatggtttatttatatagaaaattaaacg |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8020975 |
ttttcacattcatattcaataaatcaatggaaaagagattgaattttggatatggagctcaacgttgtctcaatggtttatttatatagaaaattaaagg |
8020876 |
T |
|
| Q |
316 |
agtgtggtacatcttcaatgtgagaaaattttgtccattttagtg |
360 |
Q |
| |
|
|| | | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8020875 |
agcgcgttacatcttcaatgtgagaaaattttgtccattctagtg |
8020831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University