View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_low_6 (Length: 348)
Name: NF3589_low_6
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 49257328 - 49257655
Alignment:
| Q |
4 |
ggagcagcacagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactcagagaactagcatc |
103 |
Q |
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| T |
49257328 |
ggagcatctcagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactcagagaactagcatc |
49257427 |
T |
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| Q |
104 |
ttaggccatgctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaatta |
203 |
Q |
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| T |
49257428 |
ttaggccatgctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaatta |
49257527 |
T |
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| Q |
204 |
aggcacgggaaaggatatttcaagaaggttttgcagtagaaaggatagattagtttgagcaaataaagaagattcctcagagttgccaacttgattaatt |
303 |
Q |
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| T |
49257528 |
aggcacgggaaaggatatttcaagaaagttttgcagtacaaaggatagattagtttgagcaaataaagaagattcctcagagttgccaacttgattaatt |
49257627 |
T |
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| Q |
304 |
aaaaagatcatatctcatatactgtatg |
331 |
Q |
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| T |
49257628 |
aaaaagatcatatctcatatactgtatg |
49257655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 49270311 - 49270532
Alignment:
| Q |
6 |
agcagcacagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactcaga--gaactagcatc |
103 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||| | |||||| |||| |
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| T |
49270311 |
agcatcacagatcaagaaatcctgtcaagctaaatattttcacattattatgttaaacttgagaagataattatgttcatactcaaacagaactaacatc |
49270410 |
T |
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| Q |
104 |
ttaggccatgctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaatta |
203 |
Q |
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| T |
49270411 |
ttaggccttgctatcttattatgattctgtaacagttttgaacatgtactgtttattgaaatataataatttctggaatgtc--tgattgcaggcaatca |
49270508 |
T |
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| Q |
204 |
aggcacgggaaaggatatttcaag |
227 |
Q |
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| T |
49270509 |
aggcacgggaaaggatatttcaag |
49270532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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