View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_low_7 (Length: 330)
Name: NF3589_low_7
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 24614600 - 24614907
Alignment:
| Q |
8 |
tgagatgaatagtaccagaaagaaaagcattagaagctaaacgactagaaagtgcatcaagaagagttgattttccagaaccagaaggtcccataagagc |
107 |
Q |
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| T |
24614600 |
tgagaagaatagtaccagaaagaaaagcattagaagctaaacgactagaaagtgcatcaagaagagttgattttccagaaccagaaggtcccataagagc |
24614699 |
T |
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| Q |
108 |
agtgaaatagcctggttcagcataaccagttaaattctcaagaacattttgtatttcaccattgcttagggttaccataacagttaaatctttccatgtt |
207 |
Q |
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| T |
24614700 |
agtgaaatagcctggttcagcataaccagttaaattctcaagaacattttgtatttcaccattgcttagggttaccataacagttaaatctttccatgtt |
24614799 |
T |
|
| Q |
208 |
aatcttgctgaaacatcaccaatgatatctggttttgctttttctctccatagggtttcactcaatggactcaaagatggtaaatttgatgttacttcat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614800 |
aatcttgctgaaacatcaccaatgatatctggttttgctttttctctccatagggtttcactcaatggactcaaagatggtaaatttgatgttacttcat |
24614899 |
T |
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| Q |
308 |
ttcctaat |
315 |
Q |
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|||||||| |
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| T |
24614900 |
ttcctaat |
24614907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 29476658 - 29476616
Alignment:
| Q |
61 |
gcatcaagaagagttgattttccagaaccagaaggtcccataa |
103 |
Q |
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| T |
29476658 |
gcatcaagaagagtagattttccagaaccagatggacccataa |
29476616 |
T |
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