View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3590_low_1 (Length: 437)

Name: NF3590_low_1
Description: NF3590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3590_low_1
NF3590_low_1
[»] chr4 (1 HSPs)
chr4 (8-422)||(24727366-24727779)
[»] chr7 (1 HSPs)
chr7 (164-224)||(42419767-42419827)
[»] chr6 (2 HSPs)
chr6 (313-383)||(32367288-32367355)
chr6 (46-93)||(34253728-34253775)
[»] chr8 (1 HSPs)
chr8 (305-346)||(14179291-14179332)
[»] chr5 (1 HSPs)
chr5 (46-103)||(31987490-31987547)
[»] chr1 (3 HSPs)
chr1 (255-349)||(20731711-20731808)
chr1 (68-103)||(26379248-26379283)
chr1 (46-103)||(14725041-14725099)
[»] chr2 (1 HSPs)
chr2 (46-103)||(27557206-27557263)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Original strand, 24727366 - 24727779
Alignment:
Q  8 gacatcatcacgatataaactcgtgtacgagtatctcatgttggaacactagtaagctatagtggaaagttggaaagaataaacaccttagtaagaataa 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24727366 gacatcatcacgatataaactcgtgtacaagtatctcatgttggaacactagtaagttatagtggaaagttggaaagaataaacaccttagtaagaataa 24727465  T
Q  108 cccaacaatttgaaacaaacgatgcttggtcatcaagtataacattcactttaataatcttgtttttactttgagttgagcttattttttgttaccgttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24727466 cccaacaatttgaaacaaacgatgcttggtcatcaagtataacattcactttaataatcttgtttttactttgagttgagcttattttttgttaccgttt 24727565  T
Q  208 ctatctctttctatgatttgaatctataatgtttcacatttttgttgaataatgagaaaaagtggaaacagaatataattgaataata--nnnnnnnnna 305  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           |    
T  24727566 ctatctctttctatgatttgaatttataatgtttcacatttttgttgaataatgagaaaaggtggaaacagaatataattgaataatattttttttttta 24727665  T
Q  306 aagaatcaagtaaaatacattttgatgtgtgtgtttaaataatagtgtgtcctaatacatgtgttcaagtaagactatctccaacacttataaagtggta 405  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||     
T  24727666 aagaatcaagtaaaatacattttgatgtgtgtgttta---aatagtgtgtccaaatacattttttcaagtaagactatctccaacacttataaagtggtg 24727762  T
Q  406 ggtccaagaatttttcc 422  Q
    |||| ||||||||||||    
T  24727763 ggtcaaagaatttttcc 24727779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 42419827 - 42419767
Alignment:
Q  164 atcttgtttttactttgagttgagcttattttttgttaccgtttctatctctttctatgat 224  Q
    |||||||||||| |||||||||||||||||| |||||| ||||  ||||||||||||||||    
T  42419827 atcttgtttttattttgagttgagcttatttgttgttatcgttggtatctctttctatgat 42419767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 32367355 - 32367288
Alignment:
Q  313 aagtaaaatacattttgatgtgtgtgtttaaataatagtgtgtcctaatacatgtgttcaagtaagactat 383  Q
    ||||||||||||||||||||||||||||||   || ||||||||| |||||||||| | ||||||||||||    
T  32367355 aagtaaaatacattttgatgtgtgtgttta---aacagtgtgtccaaatacatgtgcttaagtaagactat 32367288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 34253728 - 34253775
Alignment:
Q  46 tgttggaacactagtaagctatagtggaaagttggaaagaataaacac 93  Q
    |||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  34253728 tgttggaacactagcaatttatagtggaaagtttgaaagaataaacac 34253775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 14179291 - 14179332
Alignment:
Q  305 aaagaatcaagtaaaatacattttgatgtgtgtgtttaaata 346  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  14179291 aaagaattaagtaaaatacattttgatgtgtgtgtttaaata 14179332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 31987547 - 31987490
Alignment:
Q  46 tgttggaacactagtaagctatagtggaaagttggaaagaataaacaccttagtaaga 103  Q
    |||||||||||||| ||| || |||||||||||| |||||||||||||||| ||||||    
T  31987547 tgttggaacactagcaagttacagtggaaagttgaaaagaataaacaccttggtaaga 31987490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 20731808 - 20731711
Alignment:
Q  255 aataatgagaaaaagtggaaacagaatataattgaataatannnnnnnnn-aaagaatcaagtaaaatacattttgatgtgt--gtgtttaaataata 349  Q
    ||||||||||||||||||||| |||| ||| ||||||||||          ||||||| |||||||||||||||||||||||  ||||||||||||||    
T  20731808 aataatgagaaaaagtggaaagagaaaatagttgaataatatttattttttaaagaattaagtaaaatacattttgatgtgtgtgtgtttaaataata 20731711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 26379248 - 26379283
Alignment:
Q  68 agtggaaagttggaaagaataaacaccttagtaaga 103  Q
    |||||||||||||| |||||||||||||||||||||    
T  26379248 agtggaaagttggatagaataaacaccttagtaaga 26379283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 14725099 - 14725041
Alignment:
Q  46 tgttggaacactagtaagctatagtggaaa-gttggaaagaataaacaccttagtaaga 103  Q
    |||||||||||||| ||| ||  ||||||| ||||||||||||||||||||| ||||||    
T  14725099 tgttggaacactagcaagataatgtggaaaagttggaaagaataaacaccttggtaaga 14725041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 27557263 - 27557206
Alignment:
Q  46 tgttggaacactagtaagctatagtggaaa-gttggaaagaataaacaccttagtaaga 103  Q
    ||||||||| ||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  27557263 tgttggaactctagtaa-caatagtggaaaagttggatagaataaacaccttagtaaga 27557206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University