View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3590_low_3 (Length: 313)
Name: NF3590_low_3
Description: NF3590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3590_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 21981323 - 21981396
Alignment:
| Q |
172 |
cctacaaagaaatagaatggcatcgagaatgaatggagtcgaagaaggaaattcgaaaaagtaaatgaaatata |
245 |
Q |
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| T |
21981323 |
cctacaaataaatagaatggcatcgagaataaatggagtggaagaaggaaattcaaaaaggtaaatgaaatata |
21981396 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 21982602 - 21982652
Alignment:
| Q |
247 |
tgacattgagagatttaacttgaagcccaacttcgatgtatacggataatg |
297 |
Q |
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| T |
21982602 |
tgacattgagagatttaacttgaagcccaacttcaatgtatacggataatg |
21982652 |
T |
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