View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3591_high_1 (Length: 397)
Name: NF3591_high_1
Description: NF3591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3591_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 43135327 - 43135583
Alignment:
| Q |
8 |
cgaagaatatagtaatgtaagatttgtgaagttttgatttgaaagaaatcgtgttcctcttgcttacgctaaaatatgtctatttcaacaaatgtcacaa |
107 |
Q |
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| T |
43135327 |
cgaacaatatagtaatgtaagatttgtgaagttttgatttgaaagaaatcatgttcctcttgcttacgcaaaaatatgtctatttcaacaaatgtcacaa |
43135426 |
T |
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| Q |
108 |
tcatcctatggtcatgacaactggttttggtattcatttacgaattaatcaatgcatcgtgtctatcatcattgcaatttgtctcaaggcataacaacta |
207 |
Q |
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| T |
43135427 |
tcatcctatggtcatgacaactggttttggtattcatttacgaattaatcaatgcatcgtgtctgtcatcattgcaatttgtctcaaggcataacaacta |
43135526 |
T |
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| Q |
208 |
acaagac----gagaaaatataactcctttgaaattctcatcttagatgtgatttag |
260 |
Q |
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| T |
43135527 |
acaagacgagagagaaaataaaactcgtttgaaattctcatcttagatgtgatttag |
43135583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 261 - 397
Target Start/End: Original strand, 43138663 - 43138799
Alignment:
| Q |
261 |
aggaggcggcacaaccataagctgcaaacgctcaaaatgcgatcatgcatgagccagatttgcaaggcatctaacactgcttcatcaaccatattttcac |
360 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
43138663 |
aggaggcagcacaaccataagctgcaaacactcaaaatgcgatcatgcatgagccagatttgcaaggcatctaacgctgcttcattgaccatattttcac |
43138762 |
T |
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| Q |
361 |
cataaaaaacgagggagctttataggggttgatctgg |
397 |
Q |
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| T |
43138763 |
cataaaaaacgagggagctttatcggggttgatctgg |
43138799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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