View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3591_high_3 (Length: 319)
Name: NF3591_high_3
Description: NF3591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3591_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 43138800 - 43139106
Alignment:
| Q |
1 |
tgatgcagattgagactttagtattttaaagatcttaggttcattttctctaaaagccaataattcatgtgttgggtcggtttatagttgatacgacatt |
100 |
Q |
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| T |
43138800 |
tgatgcagattgagactttagtattttaaagatcttaggttcattttctctaaaagccaataattcatgtgttgggtcggtttatagttgatacgacatt |
43138899 |
T |
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| Q |
101 |
ttgctctaacttcagttcgaatctactgatgaacaatgagattgatgttagaattctataaaaccagatacaaaattctaccaagaacaacgaaaacaaa |
200 |
Q |
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| T |
43138900 |
ttactctaacttcagttcgaatctactagtgaacaatgacattgatgttagaattctataaaaccagatacaaaattctaccaagaacaacaaaaacaaa |
43138999 |
T |
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| Q |
201 |
aattaaagaattaagacatacatccgttcattgttcttttttgaagatgttaaggctcttccaagagtctcacattgatggtgaaagttactcaatagag |
300 |
Q |
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| T |
43139000 |
aattaaagaattaagacatacattcgttcattgttcttttttgaagatgttaaggctcttccaagagtctcacattgatggtgaaagttactcaatagag |
43139099 |
T |
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| Q |
301 |
atttttg |
307 |
Q |
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||||||| |
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| T |
43139100 |
atttttg |
43139106 |
T |
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