View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3591_high_6 (Length: 212)
Name: NF3591_high_6
Description: NF3591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3591_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 11859425 - 11859243
Alignment:
| Q |
18 |
gtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattcttaatctcaattcgcaaatcat |
117 |
Q |
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| T |
11859425 |
gtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattctcaatctcaattcgcaaatcat |
11859326 |
T |
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| Q |
118 |
ctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatga |
200 |
Q |
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| T |
11859325 |
ctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtgatga |
11859243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 12038168 - 12038039
Alignment:
| Q |
61 |
ttaatttcttctgcaacttcttgagatcatcattct---taatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatc |
157 |
Q |
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| T |
12038168 |
ttaatttcttctgcaacttctcaagataatcaggctcattaatctcaaatctcaaatcatctataacaagtaagaggcgtttctcatgatgagac---tc |
12038072 |
T |
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| Q |
158 |
agtaacacattttactatggattcaacatcaaa |
190 |
Q |
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| T |
12038071 |
ggcaacactttttgctatagattcaacatcaaa |
12038039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 11827257 - 11827171
Alignment:
| Q |
48 |
ccagcagcctccattaatttcttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag |
131 |
Q |
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| T |
11827257 |
ccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag |
11827171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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