View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3591_low_2 (Length: 341)
Name: NF3591_low_2
Description: NF3591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3591_low_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 3991153 - 3990816
Alignment:
| Q |
1 |
cgcttgttataatgcttgtaaaagcacataatgttatgaagctgaaaataatcgtttgtcattgcatgcacagccctgtactgtgtttgacaaatttaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3991153 |
cgcttgttataatgcttgtaaaagcacataatgttatgaagctgaaaataattgtttgtcattgcatgcacagccctgtactgtgtttgacaaatttaca |
3991054 |
T |
|
| Q |
101 |
ctacacacagtcacttgttattcttcaactttt-cggtatattgaaacgggacttgaaggtgatgatctgtataacaggaaagcagcagggatacatata |
199 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3991053 |
ctacacattgtcacttgttattcttcaattttttcggtatattgaaacgggacttgaaggtgatgatctgtataacaggaaagcagcagggatacatata |
3990954 |
T |
|
| Q |
200 |
tataattgcttattctgttgctaatgtgaaattagattttgtttgcatctgataaaattttgatgaacaatggaacttccgatggaatatttgtacttag |
299 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990953 |
----attgcttattatgctgctaatgtgaaattagatttcgtttgcatctgataaaattttgatgaacaatggaacttccgatggaatatttgtacttag |
3990858 |
T |
|
| Q |
300 |
ccaagcataatgggtatatcattttactgatgctaattttct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990857 |
ccaagcataatgggtatatcattttactgatgctaattttct |
3990816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 86 - 309
Target Start/End: Complemental strand, 35390977 - 35390757
Alignment:
| Q |
86 |
tttgacaaatttacactacacacagtcacttgttattcttcaactttt-cggtatattgaaacgggacttgaaggtgatgatctgtataacaggaaagca |
184 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35390977 |
tttgacaactttaaactacacgttgtcacttattattcatcaactttttcggtactttgaaacgggacttgaaggtgatgatctgtataactggaaagca |
35390878 |
T |
|
| Q |
185 |
gcagggatacatatatataattgcttattctgttgctaatgtgaaattagattttgtttgcatctgataaaattttgatgaacaatggaacttccgatgg |
284 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
35390877 |
gcagggatacatata----attgcttactctgctgctaatgtgaaattagatttcgttttcatccgataaaatttcaatgaacaatggaacttccgatgg |
35390782 |
T |
|
| Q |
285 |
aatatttgtacttagccaagcataa |
309 |
Q |
| |
|
|||||||| ||||||| ||| |||| |
|
|
| T |
35390781 |
aatatttgcacttagcaaagtataa |
35390757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University