View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3591_low_6 (Length: 239)

Name: NF3591_low_6
Description: NF3591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3591_low_6
NF3591_low_6
[»] chr7 (7 HSPs)
chr7 (1-148)||(3991173-3991320)
chr7 (106-166)||(1885587-1885647)
chr7 (65-170)||(44172838-44172939)
chr7 (129-169)||(10893355-10893395)
chr7 (129-169)||(31837762-31837802)
chr7 (115-147)||(33668133-33668165)
chr7 (115-166)||(46550784-46550836)
[»] chr4 (8 HSPs)
chr4 (106-162)||(35391243-35391299)
chr4 (89-160)||(22799861-22799932)
chr4 (3-56)||(35391160-35391213)
chr4 (123-170)||(19262926-19262973)
chr4 (106-167)||(35133134-35133195)
chr4 (128-168)||(683064-683104)
chr4 (128-168)||(21732367-21732407)
chr4 (130-170)||(43093534-43093574)
[»] chr1 (10 HSPs)
chr1 (112-157)||(32637858-32637903)
chr1 (87-145)||(25640720-25640778)
chr1 (106-170)||(43328477-43328541)
chr1 (137-172)||(8203829-8203864)
chr1 (106-169)||(12611977-12612040)
chr1 (111-166)||(24462260-24462315)
chr1 (112-170)||(16164306-16164364)
chr1 (128-170)||(29230075-29230117)
chr1 (106-167)||(51191103-51191163)
chr1 (137-169)||(24701116-24701148)
[»] chr2 (2 HSPs)
chr2 (112-170)||(40681992-40682050)
chr2 (127-167)||(43065571-43065611)
[»] chr8 (3 HSPs)
chr8 (126-169)||(1586619-1586662)
chr8 (100-167)||(24764804-24764869)
chr8 (118-170)||(25161235-25161287)
[»] chr6 (5 HSPs)
chr6 (95-158)||(3449849-3449912)
chr6 (111-170)||(10760832-10760890)
chr6 (120-170)||(8148130-8148180)
chr6 (118-183)||(9024173-9024238)
chr6 (114-167)||(18803260-18803313)
[»] chr5 (1 HSPs)
chr5 (122-169)||(27253296-27253343)
[»] chr3 (1 HSPs)
chr3 (119-170)||(9210823-9210874)
[»] scaffold0024 (1 HSPs)
scaffold0024 (121-170)||(59091-59140)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3991173 - 3991320
Alignment:
Q  1 tgtaaacatgtaattgatttttgtaccaatcaaagctaactgcgtatatattactagtaccaaaacttctaattgaagttgtgtcaggtgtctgacacat 100  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3991173 tgtaaacatgtaattgatttttgtaccaaacaaagttaactgcgtatatattactagtaccaaaacttctaattgaagttgtgtcaggtgtctgacacat 3991272  T
Q  101 gtcattgtctgacaccaacacgacattgacacatgagattacattcac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3991273 gtcattgtctgacaccaacacgacattgacacatgagattacattcac 3991320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 1885647 - 1885587
Alignment:
Q  106 tgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaa 166  Q
    |||| |||||||||||||||  ||||| || ||||||||| | ||||||||||||||||||    
T  1885647 tgtccgacaccaacacgacaccgacacttgtgattacattgaattatgtcattttttcaaa 1885587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 44172838 - 44172939
Alignment:
Q  65 acttctaattgaagttgtgtcaggtgtctgacacatgtcattgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttca 164  Q
    |||||| ||||||||| ||||| ||||| ||||| ||||| ||    |||||||||| |||   ||||||| ||||||||| | |||||||||||| |||    
T  44172838 acttctgattgaagttatgtcacgtgtccgacacgtgtcagtg----acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctca 44172933  T
Q  165 aattat 170  Q
    ||||||    
T  44172934 aattat 44172939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 10893355 - 10893395
Alignment:
Q  129 acacatgagattacattcacttatgtcattttttcaaatta 169  Q
    ||||||| ||||||||||| |||||||||||| ||||||||    
T  10893355 acacatgcgattacattcaattatgtcattttctcaaatta 10893395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 31837802 - 31837762
Alignment:
Q  129 acacatgagattacattcacttatgtcattttttcaaatta 169  Q
    ||||||||||||||||||| |||| ||||||| ||||||||    
T  31837802 acacatgagattacattcaattatttcattttctcaaatta 31837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 33668165 - 33668133
Alignment:
Q  115 ccaacacgacattgacacatgagattacattca 147  Q
    ||||||||||||||||||||| |||||||||||    
T  33668165 ccaacacgacattgacacatgtgattacattca 33668133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 46550784 - 46550836
Alignment:
Q  115 ccaacacga-cattgacacatgagattacattcacttatgtcattttttcaaa 166  Q
    ||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||    
T  46550784 ccaacacgaacactgacacatgtgattacactcaattatgtcattttttcaaa 46550836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 35391243 - 35391299
Alignment:
Q  106 tgtctgacaccaacacgacattgacacatgagattacattcacttatgtcatttttt 162  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35391243 tgtccgacatcaacacgacactgacacatgagattacattcagttatgtcatttttt 35391299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 22799861 - 22799932
Alignment:
Q  89 tgtctgacacatgtcattgtctgacaccaacacgacattgacacatgagattacattcacttatgtcatttt 160  Q
    |||| |||||||||||||||| |||||  |||||||| |||||| || ||||||||| | ||||||||||||    
T  22799861 tgtcagacacatgtcattgtccgacactgacacgacactgacacgtgtgattacattgaattatgtcatttt 22799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 35391160 - 35391213
Alignment:
Q  3 taaacatgtaattgatttttgtaccaatcaaagctaactgcgtatatattacta 56  Q
    ||||| ||||||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  35391160 taaacttgtaattgatttttgtaccaaacaaaggtaactgcatatatatcacta 35391213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 19262926 - 19262973
Alignment:
Q  123 acattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    ||||||||||||| ||||||||||| ||||||||| || |||||||||    
T  19262926 acattgacacatgtgattacattcaattatgtcatcttctcaaattat 19262973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 35133134 - 35133195
Alignment:
Q  106 tgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaat 167  Q
    |||| ||||||||||| |||  ||| |||||||||||||||| |||||| || |||||||||    
T  35133134 tgtcagacaccaacacaacacggacgcatgagattacattcaattatgttatattttcaaat 35133195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 683104 - 683064
Alignment:
Q  128 gacacatgagattacattcacttatgtcattttttcaaatt 168  Q
    |||||||| ||||||||||| |||||||||||| |||||||    
T  683104 gacacatgtgattacattcaattatgtcattttctcaaatt 683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 21732367 - 21732407
Alignment:
Q  128 gacacatgagattacattcacttatgtcattttttcaaatt 168  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  21732367 gacacatgtgattacaatcaattatgtcattttttcaaatt 21732407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 43093534 - 43093574
Alignment:
Q  130 cacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  43093534 cacatgtgattacattcaattatgccattttttcaaattat 43093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 32637903 - 32637858
Alignment:
Q  112 acaccaacacgacattgacacatgagattacattcacttatgtcat 157  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||    
T  32637903 acaccaacacgacattgacacatgtgattacattcaattatgtcat 32637858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 25640778 - 25640720
Alignment:
Q  87 ggtgtctgacacatgtcattgtctgacaccaacacgacattgacacatgagattacatt 145  Q
    |||||||||||||||| | | ||||||||| |||||||| ||||||||| |||||||||    
T  25640778 ggtgtctgacacatgttagtctctgacacctacacgacaatgacacatgtgattacatt 25640720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 43328541 - 43328477
Alignment:
Q  106 tgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||| ||||||||||||||| ||||||||| | ||||||| | |||| ||||||| |||||||||    
T  43328541 tgtccgacaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattat 43328477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 8203864 - 8203829
Alignment:
Q  137 gattacattcacttatgtcattttttcaaattatga 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  8203864 gattacattcacttatgtcattttctcaaattatga 8203829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 12612040 - 12611977
Alignment:
Q  106 tgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaatta 169  Q
    ||||| |||||||||||| | ||||||||  ||||||| ||| |||||| ||||||||||||||    
T  12612040 tgtctaacaccaacacgatactgacacatatgattacactcaattatgtgattttttcaaatta 12611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 24462260 - 24462315
Alignment:
Q  111 gacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaa 166  Q
    ||||||||||||||| ||| || || ||||||||| | ||||||||||||||||||    
T  24462260 gacaccaacacgacactgaaacttgtgattacattgaattatgtcattttttcaaa 24462315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 16164306 - 16164364
Alignment:
Q  112 acaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||||||||||||| ||||||||   |||||||| | |||||| |||||||||||||||    
T  16164306 acaccaacacgacaatgacacatataattacattaaattatgtgattttttcaaattat 16164364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 29230117 - 29230075
Alignment:
Q  128 gacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    ||||||||| |||||||||| |||||||||||| |||||||||    
T  29230117 gacacatgatattacattcaattatgtcattttctcaaattat 29230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 51191163 - 51191103
Alignment:
Q  106 tgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaat 167  Q
    |||||||||| |||||| |  || |||||| ||||||||||| |||||||||||||||||||    
T  51191163 tgtctgacacaaacacgtcgctggcacatgtgattacattca-ttatgtcattttttcaaat 51191103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 24701116 - 24701148
Alignment:
Q  137 gattacattcacttatgtcattttttcaaatta 169  Q
    ||||||||||| |||||||||||||||||||||    
T  24701116 gattacattcaattatgtcattttttcaaatta 24701148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 40682050 - 40681992
Alignment:
Q  112 acaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    ||||||||||||||||||||| ||  |||||||| | |||||||||||| |||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattat 40681992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 43065611 - 43065571
Alignment:
Q  127 tgacacatgagattacattcacttatgtcattttttcaaat 167  Q
    ||||||||| ||||||||| | |||||||||||||||||||    
T  43065611 tgacacatgtgattacatttagttatgtcattttttcaaat 43065571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 1586662 - 1586619
Alignment:
Q  126 ttgacacatgagattacattcacttatgtcattttttcaaatta 169  Q
    |||||||||| |||||| |||| |||||||||||||||||||||    
T  1586662 ttgacacatgtgattacgttcaattatgtcattttttcaaatta 1586619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 24764804 - 24764869
Alignment:
Q  100 tgtcattgtctgacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaat 167  Q
    ||||| |||| |||||| |||||||| ||||||||| ||||||||| | ||  |||||||||||||||    
T  24764804 tgtcagtgtccgacaccgacacgacagtgacacatgtgattacatttaatt--gtcattttttcaaat 24764869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 25161287 - 25161235
Alignment:
Q  118 acacgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||    
T  25161287 acacgacactgacacatgtgatgacattcaattataccattttttcaaattat 25161235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 3449849 - 3449912
Alignment:
Q  95 acacatgtcattgtctgacaccaacacgacattgacacatgagattacattcacttatgtcatt 158  Q
    |||| ||||| ||||||||||||||||| |||||| ||||| |||| |||| | ||||||||||    
T  3449849 acacttgtcaatgtctgacaccaacacggcattgaaacatgtgattgcattgaattatgtcatt 3449912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 10760832 - 10760890
Alignment:
Q  111 gacaccaacacgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||||||||||||||| ||||| || |||||||||||  ||||||||||| |||||||||    
T  10760832 gacaccaacacgacatcgacacgtgtgattacattca-atatgtcattttctcaaattat 10760890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 8148180 - 8148130
Alignment:
Q  120 acgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||||||||| ||||  ||||||||||| |||||||||||| |||||||||    
T  8148180 acgacattgaaacatacgattacattcaattatgtcattttctcaaattat 8148130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 9024173 - 9024238
Alignment:
Q  118 acacgacattgacacatgagattacattcacttatgtcattttttcaaattatgacttgtatcgac 183  Q
    |||||||| ||||||||  ||||||||| | |||||||||||| ||||||||| | |||| |||||    
T  9024173 acacgacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgac 9024238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 18803313 - 18803260
Alignment:
Q  114 accaacacgacattgacacatgagattacattcacttatgtcattttttcaaat 167  Q
    |||||||  ||||||||||||| ||||||||||| |||||| ||||| ||||||    
T  18803313 accaacataacattgacacatgtgattacattcaattatgtaattttctcaaat 18803260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 27253343 - 27253296
Alignment:
Q  122 gacattgacacatgagattacattcacttatgtcattttttcaaatta 169  Q
    |||| ||||||||| ||||||||||| ||||| |||||||||||||||    
T  27253343 gacactgacacatgtgattacattcaattatgacattttttcaaatta 27253296  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 9210823 - 9210874
Alignment:
Q  119 cacgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    ||||||||||||||||| |||| |||| | |||||||||||| |||||||||    
T  9210823 cacgacattgacacatgtgattccattgaattatgtcattttctcaaattat 9210874  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 59091 - 59140
Alignment:
Q  121 cgacattgacacatgagattacattcacttatgtcattttttcaaattat 170  Q
    |||| |||||||||  ||||||||||| |||||||||||||| |||||||    
T  59091 cgactttgacacatatgattacattcagttatgtcattttttaaaattat 59140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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