View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3592_low_2 (Length: 351)
Name: NF3592_low_2
Description: NF3592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3592_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 32085764 - 32086103
Alignment:
| Q |
13 |
aatatttccataatcaatcatgcctgcacaataatcatataatcatat--ttcgtactttaagagtaaccacacaacaattataattaagtcagaacata |
110 |
Q |
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| T |
32085764 |
aatatttccataatcaatcatgcctgcacaataatcatataatcatatatttcatactttaagagtaaccacacaacaattataattaagtcagaacata |
32085863 |
T |
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| Q |
111 |
taaaattcaggttcacaacaaattcttagcctaatggactaacgatactaagactagctagagctaataatcggggatgttacaca-------------- |
196 |
Q |
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| T |
32085864 |
taaaattcaggttcacaacaaattcttagcctaatggactaacgatactaagactagctagagctaataatcagggatgttacacaacccactatcacag |
32085963 |
T |
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| Q |
197 |
-acccactcaattcaaccatttgtcaaactttttcaaatttcatggtgatgtcattgcaatctgttaaaatttcatggtacatcgagcttcatgcggtgt |
295 |
Q |
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| T |
32085964 |
tacccactcaattcaactatttgtcaaactttttcaaatttcatggtgatgtcattgcaatatgttaaaatttcatggtacatcgagcttcatgcggtgt |
32086063 |
T |
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| Q |
296 |
ggtttggtaggaggaggggatggttgatggtggaaggaga |
335 |
Q |
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| T |
32086064 |
ggtttggtaggaggaggggatggttgatggtggaaggaga |
32086103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 32084330 - 32084507
Alignment:
| Q |
21 |
cataatcaatcatgcctgcacaataatcatataatcatatttcgtactttaagagtaaccacacaacaattataattaagtcagaacatataaaattcag |
120 |
Q |
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| T |
32084330 |
cataaccaatcttgcttgcacaatcatcatataatcatatttaaaacctttagagtaaccacataacaattgtaattatgtctga-----taaaattcag |
32084424 |
T |
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| Q |
121 |
gttcacaacaaattcttagcctaatggactaacgatactaagactagctagagctaataatcggggatgttacacaacccact |
203 |
Q |
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| T |
32084425 |
gttcacatcaagttcaaagcctaatggactaaagatgctaagactagttagagcaaatgaccagggatgttacatagcccact |
32084507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 32084564 - 32084635
Alignment:
| Q |
261 |
taaaatttcatggtacatcgagcttcatgcggtgtggtttggtaggaggaggggatggttgatggtggaagg |
332 |
Q |
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| T |
32084564 |
taaaatttcatggtacatcgagcttcatacattgtagtttggcaggaggaagggatggatggtggtggaagg |
32084635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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