View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_1 (Length: 746)

Name: NF3593_high_1
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_1
NF3593_high_1
[»] chr5 (1 HSPs)
chr5 (50-730)||(229161-229824)


Alignment Details
Target: chr5 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 50 - 730
Target Start/End: Complemental strand, 229824 - 229161
Alignment:
Q  50 cggtaccgatgatgtaagttcacttctctctacttgatcactatttattattagcttttaatattggacttaacacattccttacaaaatcaacgtttac 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  229824 cggtaccgatgatgtaagttcacttctctctacttgatcactatttattattagcttttaatattggacttaacatat-ccttacaaaatcaacgtttac 229726  T
Q  150 catgtcatattaatattttttatattagatctaactcattatttataaatcggtatataacatgatgcgatgcgtgcatctctttgtaaaggtcttggta 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229725 catgtcatattaatattttttatattagatctaactcattatttataaatcggtatataacatgatgcgatgcgtgcatctctttgtaaaggtcttggta 229626  T
Q  250 ttttcaatactaataaggttgatccccatatcatacacaaccctttagtttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229625 ttttcaatactaataaggttgatccccatatcatacacaaccctttagtttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaat 229526  T
Q  350 gtatatgttgcctttcctaattaaaaaacatgtttatttataaactaagcttccttttcttctactttatctatcattccactattttctagccaaattt 449  Q
                 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229525 -------------ttcctaattaaaaaacatgtttatgtataaactaagcttccttttcttctactttatctatcattccactattttctagccaaattt 229439  T
Q  450 tgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaattaattttgtgggtatattgcattgcagagtggggcagagaagttgtggtca 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229438 tgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaattaattttgtgggtatattgcattgcagagtggggcagagaagttgtggtca 229339  T
Q  550 cataagatggttggattagtatttggatgtgctttcctgtccttgctgttctagatcgatacctctgtcttctcttcagaactcagattgttatttttac 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229338 cataagatggttggattagtatttggatgtgctttcctgtccttgctgttctagatcgatacctctgtcttctcttcagaactcagattgttatttttac 229239  T
Q  650 ctctatatattattattattttctcgatgtgatatgggagtttattactacatacattgtttgcattcttgagacattcat 730  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229238 ctctatatattat---tattttctcgatgtgatatgggagtttattactacatacattgtttgcattcttgagacattcat 229161  T

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