View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_10 (Length: 470)

Name: NF3593_high_10
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_10
NF3593_high_10
[»] chr5 (2 HSPs)
chr5 (5-455)||(29700715-29701165)
chr5 (5-443)||(29678255-29678702)


Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 5 - 455
Target Start/End: Original strand, 29700715 - 29701165
Alignment:
Q  5 gagtgagatgaacaagaaatcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccat 104  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29700715 gagtgatataaacaagaattcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccat 29700814  T
Q  105 gacaaaaatctttacatcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29700815 gacaaaaatctttacatcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattc 29700914  T
Q  205 aactcattgatcttcctgaagtagaaccacctccacaagagctactaaaatctccagaattttacatcttgacttttttggagagtctcatacctcatgt 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29700915 aactgattgatcttcctgaagtagaaccacctccacaagagctactaaaatctccagaattttacatcttgacttttttggagagtctcatacctcatgt 29701014  T
Q  305 caaagcaactatcaaaaccattttatcaaacaatattgttgggttagtcctagatttcttttgtgtttcaatgattgatgttggaaatgaatttagtatc 404  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29701015 caaagcaactatcaaaaccattttatcaaacaaagttgttgggttagtcctagatttcttttgtgtttcaatgattgatgttggaaatgaatttggtatc 29701114  T
Q  405 ccttcttatttgtttctaacatcaaatgttggttttttaagtctcatgctt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29701115 ccttcttatttgtttctaacatcaaatgttggttttttaagtctcatgctt 29701165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 443
Target Start/End: Original strand, 29678255 - 29678702
Alignment:
Q  5 gagtgagatgaacaagaaatcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccat 104  Q
    |||||||||| | |||||| ||||||| |||||||||||  ||||||  ||||||||||||| |||| | ||||||||||||||||| |||| ||||  |    
T  29678255 gagtgagatggagaagaaagcagaacttatcttcattccctcaccagatattggccacttagtttcatcacttgaatttgcaaaactcttaatcaacact 29678354  T
Q  105 gacaaaaatctttacatcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattc 204  Q
     |||| ||| ||| |||||||||| | |||||||| ||||||   |  || ||| |||||||||| |||||||||||||||  || |||||| |||||      
T  29678355 cacaacaatattttcatcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaacttacaacctcaaatca 29678454  T
Q  205 aactcattgatcttcctgaagtagaaccacctccacaagagctactaaaatctccagaattttacatcttgacttttttggagagtctcatacctcatgt 304  Q
    ||||||||||||||||| |||| ||| |||| ||| |||| ||| | | ||| |||  ||  ||||||    |  || || | |  |||| |||||||||    
T  29678455 aactcattgatcttcctcaagttgaatcaccaccaaaagaactattgatatcaccaccatgctacatcaaagcacttatgcacaccctcacacctcatgt 29678554  T
Q  305 caaagcaactatcaaaaccattttatca---------aacaatattgttgggttagtcctagatttcttttgtgtttcaatgattgatgttggaaatgaa 395  Q
     ||| |||| ||  ||||||||||||||         ||| || ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  29678555 aaaatcaaccattcaaaccattttatcatctcattcaaaccatgttgttggtttagtcctagatttattttgtctttcaatgattgatgttggaaatgaa 29678654  T
Q  396 tttagtatcccttcttatttgtttctaacatcaaatgttggtttttta 443  Q
     || ||||||||||||||||||| ||||||||||||||||| ||||||    
T  29678655 cttggtatcccttcttatttgttcctaacatcaaatgttggattttta 29678702  T

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