View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_11 (Length: 470)
Name: NF3593_high_11
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 1496366 - 1496806
Alignment:
| Q |
17 |
gaaagaagtagcaaaagggtgtccgaatttacggaagttgaaggtaacaggtgggagtgaagaggggttggttagtattggggaagagtgtgttacattg |
116 |
Q |
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| T |
1496366 |
gaaagaagtagcaaaagggtgtccaaatttacggaagttgaaggtaacaggtgggagtgaagaggggttggttagtattggggaagagtgtgttacattg |
1496465 |
T |
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| Q |
117 |
atggaattggagttgcagaagtgtaacgacgatgttttacgtggtgtagcggcgtgtaagaatttgcaagtggtgaagttaattgggagtgttgatgggt |
216 |
Q |
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| T |
1496466 |
atggaattggagttgcagaagtgtaacgacgatgttttacgtggtgtagcggcgtgtaagaatttgcaagtggtgaagttaattgggagtgttgatgggt |
1496565 |
T |
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| Q |
217 |
tttatgaatctgtggtttcggatattgggttgactattttagctcaagggtgtaagaggttggtgaaattggagcttgttggttgtgaaggtagttttga |
316 |
Q |
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| T |
1496566 |
tttatgaatctgtggtttcggatattgggttgactattttagctcaagggtgtaagaggttggtgaaattggagcttgttggttgtgaaggtagtttcga |
1496665 |
T |
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| Q |
317 |
tgggattaaagccattggggcgtgttgtttgatgttggaagagttggtttttgttgatcataggatggatgatgggtggttagctggtgtttcgttttgt |
416 |
Q |
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| T |
1496666 |
tgggattaaagccattggggcgtgttgtttgatgttggaagagttggtttttgttgatcataggatggatgatgggtggttagctggtgtttcgttttgt |
1496765 |
T |
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| Q |
417 |
gagaatttgaagactttgaggtttgtgtcttgtaaggtgat |
457 |
Q |
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| T |
1496766 |
gagaatttgaagactttgaggtttgtgtcttgtaaggtgat |
1496806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 99 - 452
Target Start/End: Original strand, 13457108 - 13457461
Alignment:
| Q |
99 |
gaagagtgtgttacattgatggaattggagttgcagaagtgtaacgacgatgttttacgtggtgtagcggcgtgtaagaatttgcaagtggtgaagttaa |
198 |
Q |
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| T |
13457108 |
gaagagtgttctacattgcaggaattggagttgcagaagtgtagtgataatgtgttaagggggattgcggcgtgtgggaatttgcagattttgaagttgg |
13457207 |
T |
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| Q |
199 |
ttgggagtgttgatgggttttatgaatctgtggtttcggatattgggttgactattttagctcaagggtgtaagaggttggtgaaattggagcttgttgg |
298 |
Q |
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| T |
13457208 |
ttgggaatgttgagggattttatggttcggttgtttcggatattggtttgacgattttggctcaaggttgtaagaggcttgtgaagcttgagctttgtgg |
13457307 |
T |
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| Q |
299 |
ttgtgaaggtagttttgatgggattaaagccattggggcgtgttgtttgatgttggaagagttggtttttgttgatcataggatggatgatgggtggtta |
398 |
Q |
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| T |
13457308 |
gtgtgaagggagttttgatgggattaaggctattgggaagtgttgtcagatgttggaggagttgacattgtgtgatcataggatggatgatggatggatg |
13457407 |
T |
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| Q |
399 |
gctggtgtttcgttttgtgagaatttgaagactttgaggtttgtgtcttgtaag |
452 |
Q |
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| T |
13457408 |
gctgcggtttcgtattgtgagaatttgaagacgttgaggttacagtcttgtaag |
13457461 |
T |
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