View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_13 (Length: 431)

Name: NF3593_high_13
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_13
NF3593_high_13
[»] chr4 (4 HSPs)
chr4 (1-311)||(14071696-14072008)
chr4 (50-236)||(32238751-32238936)
chr4 (50-181)||(54152322-54152453)
chr4 (206-239)||(54152278-54152311)
[»] chr5 (3 HSPs)
chr5 (1-316)||(33954488-33954807)
chr5 (77-149)||(2430946-2431018)
chr5 (77-129)||(40495892-40495944)
[»] chr3 (7 HSPs)
chr3 (50-271)||(44940056-44940277)
chr3 (51-271)||(35424601-35424821)
chr3 (51-271)||(30812157-30812376)
chr3 (77-149)||(8426441-8426513)
chr3 (186-310)||(50663641-50663765)
chr3 (77-129)||(53179349-53179401)
chr3 (187-241)||(16251022-16251076)
[»] chr1 (4 HSPs)
chr1 (50-271)||(45709094-45709314)
chr1 (47-308)||(40821037-40821298)
chr1 (51-173)||(6463971-6464093)
chr1 (77-129)||(12467734-12467786)
[»] chr2 (3 HSPs)
chr2 (50-271)||(40262129-40262350)
chr2 (50-241)||(14820395-14820590)
chr2 (186-309)||(4915153-4915276)
[»] chr8 (1 HSPs)
chr8 (50-239)||(36122189-36122378)
[»] chr6 (2 HSPs)
chr6 (51-217)||(6208694-6208860)
chr6 (49-129)||(29409723-29409804)
[»] chr7 (1 HSPs)
chr7 (79-129)||(1554275-1554325)
[»] scaffold0018 (1 HSPs)
scaffold0018 (77-125)||(193204-193252)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 14072008 - 14071696
Alignment:
Q  1 cctcttcagatctgcaaaaatagagaagaagaaatatgnnnnnnnnaaggaagaagaagaaagatttttattaggaggaaattggagaagaaaacatggg 100  Q
    |||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  14072008 cctcttcagatctgcaaaaatagagaagaagaaagatgttttttttaaggaagaagaagaaagatgtttactagtaggaaattggagaagaaaacatggg 14071909  T
Q  101 --tatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagtagaagttaggaatatcagcttcagttgtaatgacgttttgagatca 198  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||    
T  14071908 ggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgaatatcagcttcagttgtaatggcgttttgagatca 14071809  T
Q  199 aaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaatctgaaaacggcgtttgaaaaagcaaccggaggtttggccaccgtaaacg 298  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  14071808 aaaccacgtttcctggaattacttttcattcagccaaacaagatagaaaatctgaaaacggcgtttgaaaaagcaaacggaggtttagccactgtaaacg 14071709  T
Q  299 tgttgccaaacag 311  Q
    |||||||||||||    
T  14071708 tgttgccaaacag 14071696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 32238751 - 32238936
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    ||||||||||||| || ||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32238751 gaagaagaagaaaaatgtttattcataggaaattgg-gaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaa 32238849  T
Q  150 agtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaa 236  Q
    || ||||| |||||||| ||||||| |||||| || |||||||||||||||||   |||| ||||||| ||||||||||| ||||||    
T  32238850 agcagaagctaggaataccagcttctgttgtactgtcgttttgagatcaaaactgagttttctgaaagcacttttcattctcccaaa 32238936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 54152453 - 54152322
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    |||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  54152453 gaagaagaagaaagatgtttattcataggaaattggggaagaaaacatgggtatattggtaactatatatgtcattgtaatcaaaactgagtttcacaaa 54152354  T
Q  150 agtagaagttaggaatatcagcttcagttgta 181  Q
    || ||||| |||||||| || |||| ||||||    
T  54152353 agcagaagctaggaataccaacttctgttgta 54152322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 54152311 - 54152278
Alignment:
Q  206 gtttcctgaaagtacttttcattcacccaaacaa 239  Q
    ||||||||||||||||||||||||||||||||||    
T  54152311 gtttcctgaaagtacttttcattcacccaaacaa 54152278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33954488 - 33954807
Alignment:
Q  1 cctcttcagatctgcaaaaatagagaagaagaaatatgnnnnnnnn----aaggaagaagaagaaagatttttattaggaggaaattggagaagaaaaca 96  Q
    |||||||||||||||||||||||||||||||||| |||            ||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  33954488 cctcttcagatctgcaaaaatagagaagaagaaagatgttttttttttttaaggaagaagaagaaagatgtttattagtaggaaattgaagaagaaaaca 33954587  T
Q  97 tgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagtagaagttaggaatatcagcttcagttgtaatgacgttttgagat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||  ||||||||||    
T  33954588 tgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatggatatcagcttcagttgtaatggtgttttgagat 33954687  T
Q  197 caaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaatctgaaaacggcgtttgaaaaagcaaccggaggtttggccaccgtaaa 296  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  33954688 caaaaccacgtttcctggaagtacttttcattcacccaaataagataaaaaatctgaaaacggtgtttgaaaaagcaaacggaggtttggccactgtaaa 33954787  T
Q  297 cgtgttgccaaacagccact 316  Q
    ||||||||||||||| ||||    
T  33954788 cgtgttgccaaacaggcact 33954807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 2430946 - 2431018
Alignment:
Q  77 ggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||    
T  2430946 ggaaattggagaagaaaagatgggtatattggtaactatagatgtcatttaaatcaaaaccgagtttcacaaa 2431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 40495892 - 40495944
Alignment:
Q  77 ggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40495892 ggaaattggagaagaaaacatgggtatattggtaactatacttgtcattgaaa 40495944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 44940056 - 44940277
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    |||||||||||||||| | ||||   | |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44940056 gaagaagaagaaagatgtatattcataagaaattggggaagaaaacatggatatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaa 44940155  T
Q  150 agtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaat 249  Q
    || ||||| |||||||| ||||||| |||||| |||| |||||||||||||||   |||||||||||| ||||||||||||||||||||||| | |||||    
T  44940156 agcagaagctaggaataccagcttctgttgtactgactttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaagaaaaaaaat 44940255  T
Q  250 ctgaaaacggcgtttgaaaaag 271  Q
    ||||||||  ||||||||||||    
T  44940256 ctgaaaaccacgtttgaaaaag 44940277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 271
Target Start/End: Complemental strand, 35424821 - 35424601
Alignment:
Q  51 aagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaa 150  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||||||| ||     
T  35424821 aagaagaagaaagatgtttattactaggaaattggagaagaaaacatgagtatattggtaactatacatgtcatagaaatcaaatctcagtttcaccaac 35424722  T
Q  151 gtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaatc 250  Q
    | | ||| |||||||  |  |||||  | ||   ||||||||   |||||||   ||||  ||||||| ||||||||||||||||||||| | ||| |||    
T  35424721 gcaaaagctaggaattcctacttcaactataccaacgttttggtctcaaaactgagttttttgaaagtgcttttcattcacccaaacaagctggaatatc 35424622  T
Q  251 tgaaaacggcgtttgaaaaag 271  Q
    | ||||||  |||||||||||    
T  35424621 taaaaacgtggtttgaaaaag 35424601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 51 - 271
Target Start/End: Original strand, 30812157 - 30812376
Alignment:
Q  51 aagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaa 150  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||| |||||||||||     
T  30812157 aagaagaagaaagatgtttattattaggaaattggagaagaaaatataggtatgttggtaactatacatgtcatagaaatcaaaactcagtttcacaaac 30812256  T
Q  151 gtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaatc 250  Q
    | | ||| |||||||  |  |||||| ||||    | ||||||  | ||||| | ||||  || |||| ||||||||||||||||||||| |  || |||    
T  30812257 gcaaaagctaggaatcccttcttcagctgtaccagcattttgatcttaaaactaagttt-ttggaagtgcttttcattcacccaaacaagctgaaatatc 30812355  T
Q  251 tgaaaacggcgtttgaaaaag 271  Q
    ||||||||  |||||||||||    
T  30812356 tgaaaacgtggtttgaaaaag 30812376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 8426441 - 8426513
Alignment:
Q  77 ggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  8426441 ggaaattggagaagaaaagatggatatattggtaactatacatgtcatttaaatcaaaaccgagtttcacaaa 8426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 50663765 - 50663641
Alignment:
Q  186 cgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaatctgaaaacggcgtttgaaaaagcaaccggaggtttg 285  Q
    ||||||||||||||||||| |||| ||  ||| ||||||||||||||||||||| | |  ||||||| |||| ||||||||||||| ||  | |||||||    
T  50663765 cgttttgagatcaaaaccaagttttctataagcacttttcattcacccaaacaacacaacaaatctgcaaactgcgtttgaaaaagtaaaagtaggtttg 50663666  T
Q  286 gccaccgtaaacgtgttgccaaaca 310  Q
    || ||   |||||||||||||||||    
T  50663665 gcgactaaaaacgtgttgccaaaca 50663641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 53179401 - 53179349
Alignment:
Q  77 ggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53179401 ggaaattggagaagaaaacatgggtatattggtaactatacttgtcattgaaa 53179349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 16251022 - 16251076
Alignment:
Q  187 gttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaaga 241  Q
    |||||||| |||||||||| ||||||| |   |||||||||||||||||||||||    
T  16251022 gttttgagctcaaaaccacctttcctggattcacttttcattcacccaaacaaga 16251076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 45709314 - 45709094
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    |||||||||||||||| ||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45709314 gaagaagaagaaagatgtttattcatgggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaa 45709215  T
Q  150 agtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaat 249  Q
    || ||||| |||||||| ||||||| |||||| || | |||||||||||||||   |||||||||||| ||||||||||||||||||||||| | |||||    
T  45709214 agcagaagctaggaataccagcttctgttgtactggccttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaaga-aaaaaat 45709116  T
Q  250 ctgaaaacggcgtttgaaaaag 271  Q
    ||| ||||  ||||||||||||    
T  45709115 ctggaaaccacgtttgaaaaag 45709094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 47 - 308
Target Start/End: Complemental strand, 40821298 - 40821037
Alignment:
Q  47 aaggaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcac 146  Q
    ||||||||||||||||||| || ||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| |    
T  40821298 aaggaagaagaagaaagatgttcattcgtaaaaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatgaaaatcgagtttccc 40821199  T
Q  147 aaaagtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaa 246  Q
    ||| | |  || |||||||| ||||||||||||||    |||||||||||||||||   |||||||| | | ||||||||||||||||||||||| | ||    
T  40821198 aaacgcaatagctaggaataccagcttcagttgtacacgcgttttgagatcaaaactgagtttcctggacgcacttttcattcacccaaacaagacaaaa 40821099  T
Q  247 aatctgaaaacggcgtttgaaaaagcaaccggaggtttggccaccgtaaacgtgttgccaaa 308  Q
    |||||  |||| ||||||||||||| || || | ||||||| ||   |||||||||||||||    
T  40821098 aatctagaaactgcgtttgaaaaagtaaacgcacgtttggctactaaaaacgtgttgccaaa 40821037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 6464093 - 6463971
Alignment:
Q  51 aagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaa 150  Q
    |||||||||||| || ||||||   |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  6464093 aagaagaagaaaaatgtttattcataggaaattggggaagaaaacataggtatattggtaactatacatgtcattgtaatcaaaactgagtttctcaaaa 6463994  T
Q  151 gtagaagttaggaatatcagctt 173  Q
    | ||||| ||| |||| ||||||    
T  6463993 gcagaagctagaaataccagctt 6463971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 12467786 - 12467734
Alignment:
Q  77 ggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12467786 ggaaattggagaagaaaacatgggtatattggtaactatacttgtcattgaaa 12467734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 40262129 - 40262350
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    ||||||||||||| || ||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40262129 gaagaagaagaaaaatgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaa 40262228  T
Q  150 agtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaagatagaaaat 249  Q
    || ||||  |||||||| ||||||  |||||| ||||||||||||||||||||   ||||||||| || ||||||||||| ||||||||||| | |||||    
T  40262229 agcagaaactaggaataccagcttatgttgtactgacgttttgagatcaaaactgagtttcctgatagcacttttcattctcccaaacaagaaaaaaaat 40262328  T
Q  250 ctgaaaacggcgtttgaaaaag 271  Q
    ||| ||||  ||||||||||||    
T  40262329 ctggaaaccacgtttgaaaaag 40262350  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 50 - 241
Target Start/End: Complemental strand, 14820590 - 14820395
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggta----tattggtaactatacatgtcattgaaatcaaaactgagtttca 145  Q
    ||||||||||||| || ||||||   || ||||||| ||||||||||||||||    |||||||||||||||||||||||| |||||||| |||||||||    
T  14820590 gaagaagaagaaaaatgtttattcatagaaaattggggaagaaaacatgggtacgtatattggtaactatacatgtcattgtaatcaaaattgagtttca 14820491  T
Q  146 caaaagtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaaga 241  Q
    |||||| | | | |||||||||||||||| |||| | || |||||||||||||||||   |||||| ||||| |||||||||||||||||||||||    
T  14820490 caaaagcatatgctaggaatatcagcttctgttgcactggcgttttgagatcaaaactgagtttcccgaaagcacttttcattcacccaaacaaga 14820395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 4915276 - 4915153
Alignment:
Q  186 cgttttgagatcaaaaccacgtttcct-gaaagtacttttcattcacccaaacaagatagaaaatctgaaaacggcgtttgaaaaagcaaccggaggttt 284  Q
    ||||||||||||||||||| ||||  | | ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||||    
T  4915276 cgttttgagatcaaaaccaagtttttttggaagtatttttcattcatccaaataagatagaaaatctgaaaacggcgtttgaaaaagcaaac-gaggttt 4915178  T
Q  285 ggccaccgtaaacgtgttgccaaac 309  Q
    |||||| |||||||||||| |||||    
T  4915177 ggccacggtaaacgtgttgtcaaac 4915153  T

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Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 36122189 - 36122378
Alignment:
Q  50 gaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaa 149  Q
    ||||||||||||| || ||||||   | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  36122189 gaagaagaagaaaaatgtttattcataagaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaa 36122288  T
Q  150 agtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaagtacttttcattcacccaaacaa 239  Q
    || |||||||| ||||| ||||||| |||||| || |||||||||||||||||   |||||||||||| |||||| ||||||||||||||    
T  36122289 agcagaagttaagaataccagcttctgttgtattggcgttttgagatcaaaactgagtttcctgaaagcactttttattcacccaaacaa 36122378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 6208694 - 6208860
Alignment:
Q  51 aagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaa 150  Q
    ||||||||||||||| ||||||   |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6208694 aagaagaagaaagatgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaa 6208793  T
Q  151 gtagaagttaggaatatcagcttcagttgtaatgacgttttgagatcaaaaccacgtttcctgaaag 217  Q
    | |||||||||||||| ||||||| |||||| || | |||||||||||||||   ||||||||||||    
T  6208794 gcagaagttaggaataccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaag 6208860  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 29409723 - 29409804
Alignment:
Q  49 ggaagaagaagaaagatttttattaggaggaaattggagaagaaaacatgggtatattggt-aactatacatgtcattgaaa 129  Q
    ||||||||||||||||||||||||   ||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||    
T  29409723 ggaagaagaagaaagatttttattcataggaaattgtagaataaaacatgggtatattggtaaactatacttgtcattgaaa 29409804  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 1554325 - 1554275
Alignment:
Q  79 aaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  1554325 aaattggagaagaaaacatgggtatattggtaactatacttttcattgaaa 1554275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 193252 - 193204
Alignment:
Q  77 ggaaattggagaagaaaacatgggtatattggtaactatacatgtcatt 125  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  193252 ggaaattggagaagaaaacatgggtatattggtaattatacttgtcatt 193204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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