View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3593_high_15 (Length: 409)
Name: NF3593_high_15
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 51127274 - 51127656
Alignment:
| Q |
17 |
agttactagtttgggaggaggaaatgatggaggagtgttgtgttttgtgtaatgttttattataagatgatgtagatgatacttgggaatgaaatattga |
116 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127274 |
agttactagtttgagaggaggaaatggttgaggagtgttgtgttttgtttaatgttttattataagatgatgtagatgatacttgggaatgaaatattga |
51127373 |
T |
|
| Q |
117 |
cccaggaaaatattacacagtcaacgacatgtaccatatgttgttaaatgcggagctcattgagtagcctaataaatttgaccctgtttggaacaaaaat |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51127374 |
cctaggaaaatattacacagtcaacgacatgtaccatatgctgtcaaatgcggagctcgttgagtagcctaataaatttgaccctgtttggaacaaagat |
51127473 |
T |
|
| Q |
217 |
gccatgtttaaggtttatttgatggttcgttgttgttatgtaatcaactaccaactaaggataatatgtcccaaaggcgagttcttactcccaattctaa |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127474 |
gccatgtttaaggtttatttggtggttcgtggttgttatgtaatcaactaccaactaaggataatatgtcccaaaggcgagttcttactcccaattctaa |
51127573 |
T |
|
| Q |
317 |
tatgtgcactggtgggtgctgggaggaaaatgtcaatcattcttttatggtctgtgattactttaggagtatctggtcctttg |
399 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127574 |
tatgtgcactagtgggtgctgggaggaaaatgtcaatcattcttttatggtctgtgattactttaggagtatctggtcctttg |
51127656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University