View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_16 (Length: 386)
Name: NF3593_high_16
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 34631288 - 34630925
Alignment:
| Q |
19 |
taaacctcttcaacagccgattatgaggatgcgaattatccttaacgatctccggcgaaactgaagagagaaactcgacgtaatcatcagagtgaaaacg |
118 |
Q |
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| T |
34631288 |
taaacctcttcaacagccgattatgaggatgcgaattatccttaacgatctccggcgaaactgaagagagaaactcgacgtaatcatcagagtgaaaacg |
34631189 |
T |
|
| Q |
119 |
acagatatcttccggcgcagcggcgaaaggaaggttgatttgcatacgacggtggagagagtagtggacgatgagattgtgtgccatgcggatacgatgg |
218 |
Q |
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| T |
34631188 |
acagatatcttccggcgcagcggcgaaaggaaggttgatttgcatacgacggtggagagagtagtggacgatgagattgtgtgccatgcggatacgatgg |
34631089 |
T |
|
| Q |
219 |
ggtttcattgggtgaccttggccgtagtaataatcaccgatgcttggttcgtagaagtagtgtacgcgacgcttcattgcatcagcgccgactgaaggaa |
318 |
Q |
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| T |
34631088 |
ggtttcattgggtgaccttgaccgtagtaataatcaccgatgcttggttcgtagaagtaggttacgcgacgcttcattgcatcagcgccgactgaaggaa |
34630989 |
T |
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| Q |
319 |
gagatgcaccaccgctctcagctactgccaactcgccgctacccatcacaaattcttctcactc |
382 |
Q |
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| T |
34630988 |
gagatgcaccaccgctctcagctactgccaactcgccgctacccatcacaaattcttctcactc |
34630925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 34637254 - 34636896
Alignment:
| Q |
19 |
taaacctcttcaacagccgattatgaggatgcgaattatccttaacgatctccggcgaaactgaagagagaaactcgacgtaatcatcagagtgaaaacg |
118 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || |
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| T |
34637254 |
taaacctcttcaactgccgataatgagagtgtgaattatccgaaacaatctccggcgaaacggaagagaggaactcgacgtaatcatcagagtgaaaccg |
34637155 |
T |
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| Q |
119 |
acagatatcttccggcgcagcggcgaaaggaaggttgatttgcatacgacggtggagagagtagtggacgatgagattgtgtgccatgcggatacgatgg |
218 |
Q |
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| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34637154 |
gcggatatcttccggcgcagcggcgaaaggacggttaatttgcatacgacggtggagagagtagtggatgatgagattgtgtgccatgcggatacgatgg |
34637055 |
T |
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| Q |
219 |
ggtttcattgggtgaccttggccgtagtaataatcaccgatgcttggttcgtagaagtagtgtacgcgacgcttcattgcatcagcgccgactgaaggaa |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||| |
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| T |
34637054 |
ggtttcattgggtgaccttgaccgtagtaataatcaccgatgcttggttcgtagaagtaggttacgcgacgcttcattgcgtcggcgccgattgaaggaa |
34636955 |
T |
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| Q |
319 |
gagatgcaccaccgctctcagctactgccaactcgccgctacccatcacaaattcttct |
377 |
Q |
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| T |
34636954 |
gtgatgcgccaccgctctcagctacacccatttcgccgctgcccattggaaattcttct |
34636896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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