View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_18 (Length: 384)
Name: NF3593_high_18
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 37742199 - 37742441
Alignment:
| Q |
11 |
caaaggtcgagaaagtggtgtttgaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgtactaggaatctcatgata |
110 |
Q |
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| T |
37742199 |
caaacgtcgagaaagtggtgtttgaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgtactaggaatctcatgata |
37742298 |
T |
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| Q |
111 |
cggttaacatatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttcagctataccaagttcaa |
210 |
Q |
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| T |
37742299 |
cggttaacatatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttcagctataccaagttcaa |
37742398 |
T |
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| Q |
211 |
ttgcacatttcactacagatagctcaacaaaaccaaatatgta |
253 |
Q |
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| T |
37742399 |
ttgcacatttcactacagctagctcaacaaaaccaaatatgta |
37742441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 37742500 - 37742557
Alignment:
| Q |
312 |
catgttacctcactatgtatttctcccatatttacctatatctcaaaaactactatat |
369 |
Q |
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| T |
37742500 |
catgttacctcactatgtatttctcccatatttacctatatctcaaaaactactatat |
37742557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 8680019 - 8680253
Alignment:
| Q |
19 |
gagaaagtggtgtttgaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgtactaggaatctcatgatacggttaac |
118 |
Q |
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| T |
8680019 |
gagaaagtggtgtttgaacatagtaaggatagttttcatggttggtagatatggttttgaatatcttcctgtgtattaggaatctcatgatgcggttaag |
8680118 |
T |
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| Q |
119 |
atatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttcagctataccaagttcaattgcacat |
218 |
Q |
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| T |
8680119 |
atatgaaggattgcatcctagagttgatgataactctaatagtgacattggtttcccatgcttttcaatggcttcagctataccaagttcaattgcacat |
8680218 |
T |
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| Q |
219 |
ttcactacagatagctcaacaaaaccaaatatgta |
253 |
Q |
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| T |
8680219 |
ttcaccacagcttggtcagcaaaaccaaatatgta |
8680253 |
T |
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