View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_23 (Length: 335)
Name: NF3593_high_23
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 6579976 - 6580296
Alignment:
| Q |
1 |
taattcgcggtaagggatacactgcttctccaccttgttgagaaaggatacgtgggatatcaattgattcaattgctgcataagaatgtaatacgaatga |
100 |
Q |
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| T |
6579976 |
taattcgcggtaagggatacactgcttctccaccttgttgagaaaggatacgtgggatatcaattgattcaattgctgcataagaatgtaatacgaatga |
6580075 |
T |
|
| Q |
101 |
gaaaaccaagtgcaatgaaacgaactgtaagaaagtgaagcaattcgattgtctggtatatttgatttgactctttctaaagtttctttattatttcctt |
200 |
Q |
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| T |
6580076 |
gaaaaccaagtgcaatgaaacgaactgtaagaaagtgaagcaattcgattgtttggtatatttgatttgactctttctaaagttcctttattatttcctt |
6580175 |
T |
|
| Q |
201 |
catcccaccatcaccacagagaaatttaaaggtaataactatattgatctgcataatgttgttgaagtgtagtttctagcccaggactttccgaacactt |
300 |
Q |
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| T |
6580176 |
catcccaccatcaccacagagaaatttaaaggtaataactatattgatctgcataatgttgttgaagtgtagtttctagcccaggactttccgaacactt |
6580275 |
T |
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| Q |
301 |
tatcaagaaggctgatgatgt |
321 |
Q |
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| T |
6580276 |
tgtcaagaagactgatgatgt |
6580296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34239668 - 34239579
Alignment:
| Q |
1 |
taattcgcggtaagggatacactgcttctccaccttgttgagaaaggatacgtgggatatcaattgattcaattgctgcataagaatgta |
90 |
Q |
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||||||| || || ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||| |||||||| |
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| T |
34239668 |
taattcgtggcaatggataaactgcttctccaccctgttgagaaaggatgcgagggatatcaattgattcgattgctgcatcagaatgta |
34239579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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