View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_30 (Length: 265)

Name: NF3593_high_30
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_30
NF3593_high_30
[»] chr1 (11 HSPs)
chr1 (1-246)||(13857793-13858038)
chr1 (23-114)||(6127959-6128050)
chr1 (6-124)||(37046988-37047105)
chr1 (35-114)||(44486142-44486221)
chr1 (35-117)||(44417447-44417528)
chr1 (51-124)||(15581142-15581214)
chr1 (7-99)||(16539628-16539720)
chr1 (23-114)||(34228886-34228977)
chr1 (22-114)||(39012303-39012395)
chr1 (35-91)||(39964540-39964596)
chr1 (47-95)||(47360510-47360558)
[»] chr6 (6 HSPs)
chr6 (121-221)||(5529279-5529379)
chr6 (35-95)||(6383988-6384047)
chr6 (50-99)||(17149584-17149633)
chr6 (35-95)||(9208276-9208336)
chr6 (35-91)||(6691535-6691591)
chr6 (4-95)||(33499498-33499590)
[»] chr5 (5 HSPs)
chr5 (16-95)||(16247095-16247174)
chr5 (50-95)||(15485419-15485464)
chr5 (35-95)||(16457841-16457902)
chr5 (51-91)||(16172984-16173024)
chr5 (35-95)||(32340321-32340381)
[»] chr2 (7 HSPs)
chr2 (16-95)||(26176291-26176370)
chr2 (61-124)||(43963999-43964061)
chr2 (35-95)||(3697384-3697444)
chr2 (51-95)||(6099519-6099563)
chr2 (37-95)||(8192466-8192524)
chr2 (35-95)||(7250260-7250320)
chr2 (51-95)||(26482124-26482168)
[»] chr3 (8 HSPs)
chr3 (35-95)||(15034376-15034436)
chr3 (51-124)||(18316499-18316571)
chr3 (50-106)||(34844391-34844447)
chr3 (56-124)||(42799753-42799820)
chr3 (35-95)||(53863852-53863912)
chr3 (51-124)||(54990706-54990778)
chr3 (33-99)||(36660790-36660855)
chr3 (51-95)||(35623267-35623311)
[»] chr8 (4 HSPs)
chr8 (35-124)||(18897169-18897258)
chr8 (22-95)||(40136935-40137007)
chr8 (43-95)||(22779686-22779738)
chr8 (35-95)||(26168961-26169021)
[»] chr7 (6 HSPs)
chr7 (35-124)||(48125159-48125247)
chr7 (51-95)||(25956293-25956337)
chr7 (35-96)||(22696347-22696408)
chr7 (6-95)||(28646997-28647086)
chr7 (35-91)||(21035153-21035209)
chr7 (51-95)||(23637016-23637060)
[»] chr4 (8 HSPs)
chr4 (38-95)||(56409982-56410039)
chr4 (51-95)||(21344848-21344892)
chr4 (51-95)||(37980148-37980192)
chr4 (50-96)||(28929702-28929748)
chr4 (57-95)||(38206132-38206170)
chr4 (34-95)||(5998671-5998732)
chr4 (56-124)||(6606061-6606128)
chr4 (4-68)||(22630268-22630332)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 13857793 - 13858038
Alignment:
Q  1 tgtaaagcaaatctttgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13857793 tgtaaagcaaatctttgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccat 13857892  T
Q  101 caacactagaccaaacccaagtggaagtttatcctttttcagaagtgattttaaaaatctagaggttagtaaatgtgattccaaattatggagcttgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13857893 caacactagaccaaacccaagtggaagtttatcctttttcagaagtgattttaaaaatctagaggttagtaaatgtgattccaaattatggagcttgata 13857992  T
Q  201 ctataaagattagtaaataatccgcacccctgtggcccatgatcct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13857993 ctataaagattagtaaataatccgcacccctgtggcccatgatcct 13858038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 6127959 - 6128050
Alignment:
Q  23 actaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaa 114  Q
    ||||| ||| ||||||||||||| ||  |||| |||| ||||||||||| |||||||| |||||||||||||||||| || ||| |||||||    
T  6127959 actagcccaccaaaattggcaccggggagaatcgaacttgagaccttgagaggagcacgctccaaggtcccaaaccaacaccaccagaccaa 6128050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 37047105 - 37046988
Alignment:
Q  6 agcaaatctttgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaaca 105  Q
    |||||| || ||||| |||||| ||| ||||||| | ||| || |||||  ||||||||||||||| |||||||| |||||||||||||| ||| || ||    
T  37047105 agcaaagctctgtatggactagcccaccaaaatttgtaccagggggaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacacca 37047006  T
Q  106 ctagaccaaacccaagtgg 124  Q
    | ||||| |||||||||||    
T  37047005 ccagacc-aacccaagtgg 37046988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 44486142 - 44486221
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaa 114  Q
    ||||||||||| ||  ||||||||  ||||||||||| |||||||| ||||||||| |||||||| || |||||| ||||    
T  44486142 aaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggttccaaaccaacaccactaggccaa 44486221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 44417447 - 44417528
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacc 117  Q
    ||||||||||| || |||||  ||||||||||||||| || ||||| |||||||||||||| ||| || || |||||||||||    
T  44417447 aaattggcaccggg-ggaatcaaacctgagaccttgagagcagcacactccaaggtcccaagccagcaccattagaccaaacc 44417528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 15581142 - 15581214
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    ||||||||||||||||||| | |||||||| |||||||||||||| ||| || ||| || || |||||||||||    
T  15581142 gaattgaacctgagacctttagaggagcacactccaaggtcccaagccaacaccaccaggcc-aacccaagtgg 15581214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 16539720 - 16539628
Alignment:
Q  7 gcaaatctttgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaacca 99  Q
    ||||| || ||||| |||| | ||| ||||||||||||| |  |||||  ||||||||||||||  |||||| | ||||||| ||||||||||    
T  16539720 gcaaagctctgtatggacttgcccaccaaaattggcaccagagggaatcaaacctgagaccttgcaaggagctcactccaagatcccaaacca 16539628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 34228977 - 34228886
Alignment:
Q  23 actaggccatcaaaattggcacctggag-gaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaa 114  Q
    ||||| ||| ||||||||||||| |||| ||||  ||||||||||||||| |||| ||| |||| ||||||||| ||| || ||| |||||||    
T  34228977 actagcccaccaaaattggcacc-ggagagaatccaacctgagaccttgagaggaacacactccgaggtcccaagccaacaccaccagaccaa 34228886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 39012395 - 39012303
Alignment:
Q  22 gactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaa 114  Q
    |||||| ||| | |||||||||||  | |||||  ||||| ||||||||| | |||||| |||||||||||||| ||| || |||||| ||||    
T  39012395 gactagcccaccgaaattggcaccgaggggaatcaaacctaagaccttgagaagagcacactccaaggtcccaagccaacaccactaggccaa 39012303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 39964596 - 39964540
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtc 91  Q
    ||||||||||| |  |||||  ||||||||||||||| |||||||| ||||||||||    
T  39964596 aaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaaggtc 39964540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 47360510 - 47360558
Alignment:
Q  47 ggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||| | |||||||||| ||||| |||||||| ||||||||||||||    
T  47360510 ggaggattcgaacctgagatcttgagaggagcacactccaaggtcccaa 47360558  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 5529279 - 5529379
Alignment:
Q  121 gtggaagtttatcctttttcagaagtgattttaaaaatctagaggttagtaaatgtgattccaaattatggagcttgatactataaagattagtaaataa 220  Q
    |||||||||||| ||| |||||||||||||||||||||  || ||||||||||||||||||| |||||||| | ||||  |||||||| |||||||||||    
T  5529279 gtggaagtttatacttcttcagaagtgattttaaaaattgagtggttagtaaatgtgattcccaattatggggtttgaggctataaaggttagtaaataa 5529378  T
Q  221 t 221  Q
    |    
T  5529379 t 5529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 6383988 - 6384047
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||||| | ||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  6383988 aaattggcacccg-agggattgaacctgagaccttgagaggagcacactccaaggtcccaa 6384047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17149584 - 17149633
Alignment:
Q  50 ggaattgaacctgagaccttgataggagcactctccaaggtcccaaacca 99  Q
    ||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  17149584 ggaatcgaacctgagaccttgagaggagcacactccaagatcccaaacca 17149633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 9208336 - 9208276
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||||| || ||||| |||||||||||||||| |||||||  ||||||| ||||||    
T  9208336 aaattggcaccagggggaatcgaacctgagaccttgagaggagcaaactccaagatcccaa 9208276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 6691535 - 6691591
Alignment:
Q  35 aaattggcacctggag-gaattgaacctgagaccttgataggagcactctccaaggtc 91  Q
    ||||||||||| |||| |||| |||||||||||||||| |||||||| ||||||||||    
T  6691535 aaattggcacc-ggagagaatcgaacctgagaccttgagaggagcacactccaaggtc 6691591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 33499590 - 33499498
Alignment:
Q  4 aaagcaaatctttgtatcgactaggccatcaaaattggcacctggaggaat-tgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||  ||||||| |||||| ||| | |||||| |||| |  ||||| ||||||||||||||||| |||||||  ||||||| ||||||    
T  33499590 aaagcaaagatttgtatggactagcccaccgaaattgacaccagagggaatctgaacctgagaccttgagaggagcaaactccaagatcccaa 33499498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 16247095 - 16247174
Alignment:
Q  16 tgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||| |||||| ||| ||| ||||||||| || || |||||||||||||||||||||||||||| || |||||||||||    
T  16247095 tgtatggactagcccaccaagattggcaccgggggggattgaacctgagaccttgataggagcacactgcaaggtcccaa 16247174  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 15485419 - 15485464
Alignment:
Q  50 ggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||    
T  15485419 ggaatcgaacctgagaccttgagaggagcacactccaaggtcccaa 15485464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 16457902 - 16457841
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttga-taggagcactctccaaggtcccaa 95  Q
    ||||||||||| ||  ||||||||| |||||||||||  |||||||| ||||||||||||||    
T  16457902 aaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaa 16457841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 16172984 - 16173024
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtc 91  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  16172984 gaatcgaacctgagaccttgagaggagcacactccaaggtc 16173024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 32340321 - 32340381
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||| | | |||| | |||||| ||||||||| |||||||| ||||||||||||||    
T  32340321 aaattggcatcggtaggattcgaacctaagaccttgagaggagcacactccaaggtcccaa 32340381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 26176291 - 26176370
Alignment:
Q  16 tgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||| |||||||||| ||||||||||||| ||  |||| ||| |||||||||||| |||||||| | ||||||||||||    
T  26176291 tgtatggactaggccaccaaaattggcaccagggagaatcgaatctgagaccttgagaggagcacaccccaaggtcccaa 26176370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 43963999 - 43964061
Alignment:
Q  61 tgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    ||||||||||| |||||||| |||||||||||||||||| ||  |||||||| |||||||||||    
T  43963999 tgagaccttgagaggagcacactccaaggtcccaaaccaacactactagacc-aacccaagtgg 43964061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 3697384 - 3697444
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||||||||  |  |||| ||||| |||||||||| |||||||||||||||||||||||    
T  3697384 aaattggcaccgaggagaatcgaaccagagaccttgagaggagcactctccaaggtcccaa 3697444  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 6099519 - 6099563
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||    
T  6099519 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaa 6099563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 8192466 - 8192524
Alignment:
Q  37 attggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||| |  ||||| |||||||||||||||| |||||||| ||||||| ||||||    
T  8192466 attggcaccagagggaatcgaacctgagaccttgagaggagcacactccaagatcccaa 8192524  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 7250320 - 7250260
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||||| || ||||||||  ||| ||||| ||||| |||||||| ||||||||||||||    
T  7250320 aaattggctccgggaggaatcaaacttgagatcttgagaggagcacactccaaggtcccaa 7250260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 26482168 - 26482124
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||| |||||||||||||||| |||||||| |||| |||||||||    
T  26482168 gaatcgaacctgagaccttgagaggagcacactcctaggtcccaa 26482124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 15034436 - 15034376
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||||| ||  ||||||||||||||||||||| |||| ||| ||||||||||||||    
T  15034436 aaattggcaccagggagaattgaacctgagaccttgagaggatcaccctccaaggtcccaa 15034376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 18316499 - 18316571
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    |||| |||||| ||||||||| |||||||| |||||||||||||| ||| || ||| ||||| |||||||||||    
T  18316499 gaatcgaacctaagaccttgagaggagcacactccaaggtcccaagccagcaccaccagacc-aacccaagtgg 18316571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 34844447 - 34844391
Alignment:
Q  50 ggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacac 106  Q
    ||||| |||||||||||||||| |||||||| |||||||||| ||| ||| ||||||    
T  34844447 ggaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacaacac 34844391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 42799753 - 42799820
Alignment:
Q  56 gaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    |||||||||||||||| |||||||| |||||||||||||| ||| || ||| || || |||||||||||    
T  42799753 gaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggcc-aacccaagtgg 42799820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 53863852 - 53863912
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||||| |   ||||||||||| ||||||||| |||||||| ||||||||||||||    
T  53863852 aaattggcaccagagagaattgaacctaagaccttgagaggagcacactccaaggtcccaa 53863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 54990778 - 54990706
Alignment:
Q  51 gaattgaacctgagaccttgat-aggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    |||| ||||||||||||||||  |||||||| |||||||||||||| ||| |||||||| ||  |||||||||||    
T  54990778 gaatcgaacctgagaccttgaggaggagcacgctccaaggtcccaagccaacaacactaaac--aacccaagtgg 54990706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 36660855 - 36660790
Alignment:
Q  33 caaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaacca 99  Q
    ||||||||||| | |||| |||||||||||||||||||| |||||||  ||||||| ||| ||||||    
T  36660855 caaaattggcaacgggag-aattgaacctgagaccttgagaggagcaaactccaagatcctaaacca 36660790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 35623267 - 35623311
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||| |||| ||||||||||| |||||||| ||||||||||||||    
T  35623267 gaatcgaacatgagaccttgagaggagcacactccaaggtcccaa 35623311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 18897258 - 18897169
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgat-aggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    ||||||||||| ||| |||| |||| |||||||||||  |||||||| ||| |||||||||||||| || |||||| || |||||||||||    
T  18897258 aaattggcaccaggaagaatcgaacatgagaccttgaggaggagcacactctaaggtcccaaaccaacaccactaggcc-aacccaagtgg 18897169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 40136935 - 40137007
Alignment:
Q  22 gactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||| ||| | ||||||||||| |||| |||  ||||||||||||||| |||||||| ||||||||||||||    
T  40136935 gactagcccaccgaaattggcaccgggag-aatcaaacctgagaccttgagaggagcacactccaaggtcccaa 40137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 22779738 - 22779686
Alignment:
Q  43 acctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||| ||||| | |||||||||||||||| ||||||||  |||||||||||||    
T  22779738 acctagaggattcgaacctgagaccttgagaggagcacattccaaggtcccaa 22779686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 26168961 - 26169021
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||| | ||||||||  ||||||||||||||| |||||||  ||||||| ||||||    
T  26168961 aaattggcatcaggaggaatcaaacctgagaccttgagaggagcaaactccaagatcccaa 26169021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 48125159 - 48125247
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    ||||||||||| ||   ||||||||||||||||||   |||||||| |||||||||||||| ||| || ||| ||||| |||||||||||    
T  48125159 aaattggcaccggggaaaattgaacctgagaccttcggaggagcacactccaaggtcccaagccaacaccaccagacc-aacccaagtgg 48125247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 25956293 - 25956337
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||    
T  25956293 gaattgaacctaagaccttgagaggagcacactccaaggtcccaa 25956337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 22696408 - 22696347
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaaa 96  Q
    ||||||||||| |  |||||  ||||||||||||||| |||||||| ||||||| |||||||    
T  22696408 aaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaagatcccaaa 22696347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 28647086 - 28646997
Alignment:
Q  6 agcaaatctttgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||| || ||||| |||| | ||| | ||||||||||| |  ||||| |||||||||||||||| || ||||| ||||||| ||||||    
T  28647086 agcaaaactctgtattgacttgcccaccgaaattggcaccagagggaatcgaacctgagaccttgagagaagcacactccaagatcccaa 28646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 21035153 - 21035209
Alignment:
Q  35 aaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtc 91  Q
    |||||||||||||||||| | | || |||| |||||| |||||||| ||||||||||    
T  21035153 aaattggcacctggaggattcggacttgagtccttgagaggagcacactccaaggtc 21035209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 23637016 - 23637060
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||| || |||||||| |||||||| ||||||||||||||    
T  23637016 gaattgaacgtgcgaccttgagaggagcacactccaaggtcccaa 23637060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 56410039 - 56409982
Alignment:
Q  38 ttggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||||| ||  |||| |||||||||||||||| |||||||| ||||||||||||||    
T  56410039 ttggcaccagggagaatcgaacctgagaccttgagaggagcacactccaaggtcccaa 56409982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 21344892 - 21344848
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||    
T  21344892 gaattgaacatgagaccttgagaggagcacactccaaggtcccaa 21344848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 37980148 - 37980192
Alignment:
Q  51 gaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||    
T  37980148 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaa 37980192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 28929748 - 28929702
Alignment:
Q  50 ggaattgaacctgagaccttgataggagcactctccaaggtcccaaa 96  Q
    ||||| |||||||||||||||| |||||||| || ||||||||||||    
T  28929748 ggaatcgaacctgagaccttgaaaggagcacacttcaaggtcccaaa 28929702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 38206132 - 38206170
Alignment:
Q  57 aacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  38206132 aacctgagaccttgagaggagcacactccaaggtcccaa 38206170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 5998671 - 5998732
Alignment:
Q  34 aaaattggcacctggaggaattgaacctgagaccttgataggagcactctccaaggtcccaa 95  Q
    |||||||||||  |||||| | |||  ||||||||||| |||||||| ||||||||||||||    
T  5998671 aaaattggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtcccaa 5998732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 6606128 - 6606061
Alignment:
Q  56 gaacctgagaccttgataggagcactctccaaggtcccaaaccatcaacactagaccaaacccaagtgg 124  Q
    |||||||||| ||||| |||| |||||||||||||||||| ||| || ||  ||||| |||||||||||    
T  6606128 gaacctgagatcttgaaaggatcactctccaaggtcccaagccaacaccatcagacc-aacccaagtgg 6606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 22630268 - 22630332
Alignment:
Q  4 aaagcaaatctttgtatcgactaggccatcaaaattggcacctggaggaattgaacctgagacct 68  Q
    |||||||| |||||||| |||| | ||| ||||||||||||| |  ||||| |||||||||||||    
T  22630268 aaagcaaaactttgtatggacttgcccaccaaaattggcaccagagggaatcgaacctgagacct 22630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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