View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_31 (Length: 261)
Name: NF3593_high_31
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 34906075 - 34905835
Alignment:
| Q |
6 |
aggagcacagactcccactcaagcatttggaagtactggtattgggcagtcaggatttggaggacaacggggtggaagtagaatagctagttactcggct |
105 |
Q |
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| T |
34906075 |
aggatcacagactcccactcaagcatttggaagtactggtattgggcagtcaggatttggaggacaacggggtggaagtagaatagctagttactcggct |
34905976 |
T |
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| Q |
106 |
acagtggaagcggatagtggtgcctctggacatacggcaaagttggagtcaatatcagccatgcctgtttacaaagataaaagccatgaggagctaagat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905975 |
acagtggaagcggatagtggtgcctctggacatacggcaaagttggagtcaatatcagccatgcctgtttacaaagataaaagccatgaggagctaagat |
34905876 |
T |
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| Q |
206 |
gggaggactatcatttgggagataaaggtgcattctttatt |
246 |
Q |
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| T |
34905875 |
gggaggactatcatttgggagataaaggtgcattctttatt |
34905835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 34895566 - 34895326
Alignment:
| Q |
6 |
aggagcacagactcccactcaagcatttggaagtactggtattgggcagtcaggatttggaggacaacggggtggaagtagaatagctagttactcggct |
105 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
34895566 |
aggatcacagactccaactcaagcatttggaagtactggtattgggcagtcaggatttggaggtcaacggggtggaagtagaatagctagttactcagct |
34895467 |
T |
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| Q |
106 |
acagtggaagcggatagtggtgcctctggacatacggcaaagttggagtcaatatcagccatgcctgtttacaaagataaaagccatgaggagctaagat |
205 |
Q |
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| T |
34895466 |
acagtggaagcagatagtggcacctctggacagactgcaaagttggagtcaatatcagccatgcctgtttacaaagataaaagccacgaggagctaagat |
34895367 |
T |
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| Q |
206 |
gggaggactatcatttgggagataaaggtgcattctttatt |
246 |
Q |
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| T |
34895366 |
gggaggactatcaattgggagataaaggtgcattctttatt |
34895326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 34909454 - 34909260
Alignment:
| Q |
31 |
tttggaagtactggtattgggcagtcaggatttggaggacaacggggtggaagtagaatagctagttactcggctacagtggaagcggatagtggtgcct |
130 |
Q |
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||||||| | ||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| || |||| | | |
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| T |
34909454 |
tttggaaatgctgatattgggcagtcgggatttggaggacaacgaggtggaagtagagtagctagttactcagctacaactgaagcaaattgtgga-cgt |
34909356 |
T |
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| Q |
131 |
ctggacatacggcaaagttggagtcaatatcagccatgcctgtttacaaagataaaagccatgaggagctaagatgggaggactatcatttgggagataa |
230 |
Q |
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| T |
34909355 |
cttga--------aaaattggagtcaatatcagtcatgcctgtttacaaagataaaagccatgaggagctaagatgggaagactatcaattgggagataa |
34909264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 34915701 - 34915640
Alignment:
| Q |
6 |
aggagcacagactcccactcaagcatttggaagtactggtattgggcagtcaggatttggag |
67 |
Q |
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|||| ||||||||||| ||| | ||||||| |||||||||||||||||| |||||||||| |
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| T |
34915701 |
aggatcacagactcccgctccggtttttggaaatactggtattgggcagtcgggatttggag |
34915640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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