View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_32 (Length: 256)

Name: NF3593_high_32
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_32
NF3593_high_32
[»] chr3 (3 HSPs)
chr3 (2-241)||(40206947-40207184)
chr3 (129-233)||(40202916-40203022)
chr3 (6-75)||(36827488-36827557)
[»] chr5 (2 HSPs)
chr5 (5-56)||(19271402-19271453)
chr5 (3-71)||(30970595-30970663)
[»] chr1 (4 HSPs)
chr1 (3-86)||(39977362-39977445)
chr1 (6-68)||(39726699-39726761)
chr1 (6-83)||(44719383-44719460)
chr1 (8-56)||(11829969-11830017)
[»] chr8 (5 HSPs)
chr8 (6-83)||(28524790-28524868)
chr8 (6-77)||(24198973-24199044)
chr8 (6-68)||(2552062-2552124)
chr8 (3-77)||(8569447-8569521)
chr8 (3-64)||(32898455-32898516)
[»] chr7 (6 HSPs)
chr7 (26-96)||(24934824-24934894)
chr7 (9-77)||(24288882-24288950)
chr7 (3-93)||(2677796-2677886)
chr7 (3-64)||(8879553-8879614)
chr7 (3-35)||(8870058-8870090)
chr7 (6-58)||(24844631-24844683)
[»] chr4 (4 HSPs)
chr4 (7-64)||(2786273-2786330)
chr4 (3-64)||(21621875-21621936)
chr4 (4-58)||(21623128-21623182)
chr4 (6-95)||(12690860-12690949)
[»] chr2 (4 HSPs)
chr2 (3-75)||(34582680-34582752)
chr2 (3-73)||(11985734-11985804)
chr2 (6-56)||(26586308-26586358)
chr2 (5-93)||(32766251-32766339)
[»] chr6 (1 HSPs)
chr6 (5-46)||(5265269-5265310)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 40206947 - 40207184
Alignment:
Q  2 aagggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacgatgtgcagagttagatact 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||||||| |||||||    
T  40206947 aagggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcatgagtcaaggaactttgtgataacgatgtgcagagtcagatact 40207046  T
Q  102 aaaattgtatgtgtttattctcccttatatatatagcccacattcgacaccatcttccttcattgcataaactagacacacgtttattcaaatcatctaa 201  Q
    ||||| |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40207047 aaaatggtatgtgtttattctccct--tatatatagcccacgttcgacaccatcttccttcattacataaactagacacacgtttattcaaatcatctaa 40207144  T
Q  202 tattgttataagcaagagtgcccaaaagggcagcacatac 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40207145 tattgttataagcaagagtgcccaaaagggcagcacatac 40207184  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 40202916 - 40203022
Alignment:
Q  129 tatatatagcccacattcgacaccatcttccttcattgcataaactag--ac---acacgtttattcaaatcatctaatattgttataagcaagagtgcc 223  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||  ||   |||||||||||||| |||| |||||   ||||||||||||||||     
T  40202916 tatatataccccacgttcaacaccatcttccttcattgcataaactagttacacaacacgtttattcaactcatttaata---ttataagcaagagtgct 40203012  T
Q  224 caaaagggca 233  Q
    ||||||||||    
T  40203013 caaaagggca 40203022  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 36827488 - 36827557
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgt 75  Q
    ||||||| ||||||||||| || |||||||  || || |||||| |||||||| |||||| |||||||||    
T  36827488 gactaaagtgataacggaagtgtacattcagagattattttatatttaatcctgagtcaaggatctttgt 36827557  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 19271453 - 19271402
Alignment:
Q  5 ggactaaactgataacggaaatgcacattcaaggactaatttatacttaatc 56  Q
    |||||||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  19271453 ggactaaactgataacggaagtgcacattaaaggactactttatatttaatc 19271402  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 30970595 - 30970663
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatct 71  Q
    |||||||||| ||||||| ||||||||||||||| || || ||| || |||||| | ||||| ||||||    
T  30970595 agggactaaagtgataacagaaatgcacattcaatgattactttgtatttaatcttgagtcagagatct 30970663  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 39977445 - 39977362
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacgatgt 86  Q
    ||||||||| || ||||| ||||||||||||||| ||||||||| || |||||||| ||||| |||  ||||||| ||| ||||    
T  39977445 agggactaagctaataacagaaatgcacattcaatgactaatttgtatttaatcctgagtcagagacatttgtgacaacaatgt 39977362  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 39726699 - 39726761
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaaga 68  Q
    ||||||||||||||  ||||||||| ||||  ||||| |||||| ||||||||||||||||||    
T  39726699 gactaaactgataaacgaaatgcactttcagagactactttatatttaatcctaagtcaaaga 39726761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 44719460 - 44719383
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacga 83  Q
    ||||||| ||||||||||| |||| |||||   |||| |||||| |||||||| ||| | |||||||||||| |||||    
T  44719460 gactaaaatgataacggaagtgcatattcataaactactttatatttaatcctgagttagagatctttgtgacaacga 44719383  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11830017 - 11829969
Alignment:
Q  8 ctaaactgataacggaaatgcacattcaaggactaatttatacttaatc 56  Q
    ||||||| |||||||||||||| || ||||||||||||| || ||||||    
T  11830017 ctaaactaataacggaaatgcatatacaaggactaatttgtatttaatc 11829969  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 28524868 - 28524790
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaa-agatctttgtgataacga 83  Q
    ||||||| ||||||||||| |||||||||||||| || ||| || |||||||| |||||| ||| |||||| |||||||    
T  28524868 gactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtcaagagacctttgtaataacga 28524790  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 24199044 - 24198973
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtga 77  Q
    ||||||| ||||||||||| ||||||||||| || || ||| || |||||||| | ||||||| ||||||||    
T  24199044 gactaaagtgataacggaagtgcacattcaatgattactttgtatttaatcctgaatcaaagacctttgtga 24198973  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 2552124 - 2552062
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaaga 68  Q
    |||||||| ||||| | ||||||||||||||||| || ||| || |||||||| |||||||||    
T  2552124 gactaaaccgataaagaaaatgcacattcaaggattactttgtatttaatcctgagtcaaaga 2552062  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 8569521 - 8569447
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtga 77  Q
    ||||||||||||||||||| || ||||||||||   |||| ||| || |||||| | ||||||||| ||||||||    
T  8569521 agggactaaactgataacgaaagtgcacattcataaactactttgtatttaatcatgagtcaaagacctttgtga 8569447  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 32898455 - 32898516
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtca 64  Q
    |||||||||| ||||||||||| |||| | ||| ||||| |||| || ||||||||||||||    
T  32898455 agggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtca 32898516  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 24934894 - 24934824
Alignment:
Q  26 tgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacgatgtgcagagttag 96  Q
    ||||||||||| ||||| ||| || |||||||||||||| ||| |||||||| | |||| |||||||||||    
T  24934894 tgcacattcaatgactattttgtatttaatcctaagtcagagacctttgtgacagcgatatgcagagttag 24934824  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 24288882 - 24288950
Alignment:
Q  9 taaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtga 77  Q
    |||| |||||| |||| ||||||||||||||||| ||| || |||||||| ||| | ||||||||||||    
T  24288882 taaagtgataatggaagtgcacattcaaggactactttgtaattaatcctgagttagagatctttgtga 24288950  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 2677796 - 2677886
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacgatgtgcagagt 93  Q
    ||||||||||||||||||| || |||||||| | ||| || ||| || |||||| | ||||| ||| |||||||| ||||| || ||||||    
T  2677796 agggactaaactgataacgaaagtgcacatttagggaatactttgtatttaatcatgagtcatagacctttgtgacaacgaggtacagagt 2677886  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 8879553 - 8879614
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtca 64  Q
    |||||||||| ||||||| |||||||||||||| | |||| ||| || |||||||| |||||    
T  8879553 agggactaaagtgataacagaaatgcacattcaggaactactttgtatttaatcctgagtca 8879614  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 8870090 - 8870058
Alignment:
Q  3 agggactaaactgataacggaaatgcacattca 35  Q
    |||||||||||||||||| ||||||||||||||    
T  8870090 agggactaaactgataacagaaatgcacattca 8870058  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 24844683 - 24844631
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcct 58  Q
    |||||||||||||| |||| ||||||||||| ||||| ||| || ||||||||    
T  24844683 gactaaactgataatggaagtgcacattcaatgactactttgtatttaatcct 24844631  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 2786330 - 2786273
Alignment:
Q  7 actaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtca 64  Q
    |||||| ||||||||||| |||||||||||||| |||||| || |||||||| |||||    
T  2786330 actaaaatgataacggaagtgcacattcaaggagtaatttgtatttaatcctgagtca 2786273  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 21621936 - 21621875
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtca 64  Q
    |||||||||| ||||||||||| ||||||||||| ||||| ||| || |||||||| |||||    
T  21621936 agggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtca 21621875  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 21623128 - 21623182
Alignment:
Q  4 gggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcct 58  Q
    ||||||||| ||||||| ||| ||||||||||||||||| ||| || ||||||||    
T  21623128 gggactaaagtgataacagaagtgcacattcaaggactattttgtatttaatcct 21623182  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 12690949 - 12690860
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacgatgtgcagagtta 95  Q
    |||||||||||| ||| ||| |||||||||| ||||| |||||  |||||||| | ||||  |||| ||||| |||||  ||||||||||    
T  12690949 gactaaactgatcacgaaaaagcacattcaatgactattttatttttaatccttaatcaataatctatgtgacaacgagatgcagagtta 12690860  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 34582680 - 34582752
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgt 75  Q
    |||||||||| ||||||||||| |||||||||| |||||| ||| || |||||||  |||||| || ||||||    
T  34582680 agggactaaagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtcaatgacctttgt 34582752  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 11985804 - 11985734
Alignment:
Q  3 agggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatcttt 73  Q
    ||||||||||||||||||| |||||||| ||||  ||||| ||| || |||||||| ||||| ||| ||||    
T  11985804 agggactaaactgataacgaaaatgcaccttcagagactactttgtatttaatcctgagtcagagaccttt 11985734  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 26586308 - 26586358
Alignment:
Q  6 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatc 56  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||| ||||||    
T  26586308 gactaaagtgataacggaagtgcacattcaaagactactttatatttaatc 26586358  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 32766251 - 32766339
Alignment:
Q  5 ggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcctaagtcaaagatctttgtgataacgatgtgcagagt 93  Q
    |||||||| ||||||||||| |||| | ||| ||||| |||| || |||||||| |||||  || || ||||| ||||| |||||||||    
T  32766251 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagt 32766339  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 5265310 - 5265269
Alignment:
Q  5 ggactaaactgataacggaaatgcacattcaaggactaattt 46  Q
    |||||||||||||||||||| ||||||||||| | |||||||    
T  5265310 ggactaaactgataacggaagtgcacattcaaaggctaattt 5265269  T

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