View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_33 (Length: 250)

Name: NF3593_high_33
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_33
NF3593_high_33
[»] chr1 (16 HSPs)
chr1 (1-240)||(28238862-28239101)
chr1 (7-112)||(47568943-47569048)
chr1 (1-136)||(28231280-28231415)
chr1 (183-242)||(23787015-23787074)
chr1 (183-242)||(24621793-24621852)
chr1 (182-240)||(28231470-28231528)
chr1 (194-239)||(4251618-4251663)
chr1 (1-59)||(6326999-6327057)
chr1 (197-240)||(47569148-47569191)
chr1 (194-240)||(671045-671091)
chr1 (1-46)||(28326081-28326126)
chr1 (204-243)||(12535529-12535568)
chr1 (186-240)||(6326806-6326860)
chr1 (183-240)||(21159199-21159259)
chr1 (195-240)||(14508864-14508909)
chr1 (7-51)||(23786830-23786874)
[»] chr5 (1 HSPs)
chr5 (196-240)||(1717877-1717921)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28238862 - 28239101
Alignment:
Q  1 agattcacaaagcaatgctcttttacaattacatcatacttaaaaagggttttcagttgaaccataagtgttatcttgttctaattgaaggattatgtaa 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  28238862 agattcacaaggcaatgcacttttacaattacatcatacttaaaaagggttttcagttggaccataagtgttatcttgttctaatcaaaggattatgtaa 28238961  T
Q  101 gataggagaaacgcacacagcaatacagttgttgaggcgtgcactccagattgatggggaaggtgactttactctcctgcagtgttataattcaatcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  28238962 gataggagaaacgcacacagcaatacagttgttgaggcgtgcactccagactgatgaggaaggtgactttactctcctgcggtgttataattaaatcata 28239061  T
Q  201 tacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28239062 tacaggctctgcaaagatagacttgtaaaccaagcctatg 28239101  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 47568943 - 47569048
Alignment:
Q  7 acaaagcaatgctcttttacaattacatcatacttaaaaagggttttcagttgaaccataagtgttatcttgttctaattgaaggattatgtaagatagg 106  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||||| |  |||||||| |||| ||  | ||||||||| |||||||    
T  47568943 acaaagcaatgctgttttacaatgacatcatacttaaaaacggttttctgttgaaccatgatagttatcttattctgatcaatggattatgtgagatagg 47569042  T
Q  107 agaaac 112  Q
    ||||||    
T  47569043 agaaac 47569048  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 28231280 - 28231415
Alignment:
Q  1 agattcacaaagcaatgctcttttacaattacatcatacttaaaaagggttttcagttgaaccataagtgttatcttgttctaattgaaggattatgtaa 100  Q
    ||||||| || ||| ||||||||||||||   |||||||||||||||||||||||||||||| || |  |||||  | ||||||   | ||||||||| |    
T  28231280 agattcataatgcattgctcttttacaatggtatcatacttaaaaagggttttcagttgaacgatgaaagttattatattctaagcaatggattatgtga 28231379  T
Q  101 gataggagaaacgcacacagcaatacagttgttgag 136  Q
    |||||||||||| || |||||||| |||||||||||    
T  28231380 gataggagaaactcaaacagcaatccagttgttgag 28231415  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 23787015 - 23787074
Alignment:
Q  183 tgttataattcaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgct 242  Q
    |||||||| |||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  23787015 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctatgct 23787074  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 24621852 - 24621793
Alignment:
Q  183 tgttataattcaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgct 242  Q
    |||||||| |||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  24621852 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctatgct 24621793  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 28231470 - 28231528
Alignment:
Q  182 gtgttataattcaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||    
T  28231470 gtgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatg 28231528  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 4251663 - 4251618
Alignment:
Q  194 aatcatatacaggctctgcaaagatagacttgtaaaccaagcctat 239  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  4251663 aatcatatccaggctctgcaaagatagacttgtaaaccaagcctat 4251618  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6327057 - 6326999
Alignment:
Q  1 agattcacaaagcaatgctcttttacaattacatcatacttaaaaagggttttcagttg 59  Q
    |||||||||||||||| |||||||| ||| ||||| |||||||| ||||||||||||||    
T  6327057 agattcacaaagcaatcctcttttataatgacatcgtacttaaacagggttttcagttg 6326999  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 47569148 - 47569191
Alignment:
Q  197 catatacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  47569148 catattcagactctgcaaagatagacttgtaaaccaagcctatg 47569191  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 671091 - 671045
Alignment:
Q  194 aatcatatacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||    
T  671091 aatcatattcaggctgtgcaaagatagacttgtaaaccaaggctatg 671045  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28326081 - 28326126
Alignment:
Q  1 agattcacaaagcaatgctcttttacaattacatcatacttaaaaa 46  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||    
T  28326081 agattcacaaagcaatgctcttttacaattatatcgtactaaaaaa 28326126  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 12535568 - 12535529
Alignment:
Q  204 aggctctgcaaagatagacttgtaaaccaagcctatgctt 243  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  12535568 aggctctgcgaagatagacttgtaaacgaagcctatgctt 12535529  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 6326860 - 6326806
Alignment:
Q  186 tataattcaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    ||||| || ||||||  ||| ||||||||||||||||||| ||||||||||||||    
T  6326860 tataactcgatcatactcagactctgcaaagatagacttgcaaaccaagcctatg 6326806  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 21159259 - 21159199
Alignment:
Q  183 tgttataattcaatcatatacaggct---ctgcaaagatagacttgtaaaccaagcctatg 240  Q
    ||||||||| || |||||| ||||||   |||||||||||||||| |||||||||||||||    
T  21159259 tgttataatacagtcatattcaggctagcctgcaaagatagacttataaaccaagcctatg 21159199  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 14508909 - 14508864
Alignment:
Q  195 atcatatacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    ||||||| ||| || ||||||||||||| |||||||||||||||||    
T  14508909 atcatattcagactatgcaaagatagacgtgtaaaccaagcctatg 14508864  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 23786830 - 23786874
Alignment:
Q  7 acaaagcaatgctcttttacaattacatcatacttaaaaagggtt 51  Q
    ||||||||||||  ||||| ||| |||||||||||||||||||||    
T  23786830 acaaagcaatgccgttttataatgacatcatacttaaaaagggtt 23786874  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 1717877 - 1717921
Alignment:
Q  196 tcatatacaggctctgcaaagatagacttgtaaaccaagcctatg 240  Q
    |||||| ||| || |||||||||||||||||||||||||||||||    
T  1717877 tcatattcagactatgcaaagatagacttgtaaaccaagcctatg 1717921  T

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