View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_40 (Length: 234)
Name: NF3593_high_40
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 40107649 - 40107422
Alignment:
| Q |
4 |
tgacaaagagaaagagatacattgcagaaattcatcacggagatgtcaagaaaacttcttatttttaaaatggagagagacaaaaatagtgcggttaagt |
103 |
Q |
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| T |
40107649 |
tgacaaagagaaagagatacattgcagaaattcatcacggaaatgtcaagaaaactt---atttttaaaatggagagagacaaaaatagtgcggttaagt |
40107553 |
T |
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| Q |
104 |
tctggatatcacagaacttcccttgtggctgcattttcacataactagtctatgatggtctgttgaaattttaaggaaggaacctcatcagacaatgcta |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40107552 |
tctggatatcacagtacttcccttgtggctgcattttcacataactagtctatgatggtctgttgaaattttaaggaaggaacctcatcagacaatgcta |
40107453 |
T |
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| Q |
204 |
atctatggcaactgatttttgaatgtaagca |
234 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40107452 |
atctatggcaactgatttttgaatgtaagca |
40107422 |
T |
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