View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_43 (Length: 230)
Name: NF3593_high_43
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 26315727 - 26315940
Alignment:
| Q |
1 |
tgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggt |
100 |
Q |
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| T |
26315727 |
tgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaataatggt |
26315826 |
T |
|
| Q |
101 |
tttgtcaaagtcgaaaaccactacaataatagccata--atggtgacagagaaatattttgtttgtttttgagaaaaccaagaatttattatactacaat |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |||| |
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| T |
26315827 |
tttgtcaaagtcgaaaaccactacaatactagccataatatggtgacaaagaaatattttgtttgtttttaaaaaaaccaagaatttattatactgcaat |
26315926 |
T |
|
| Q |
199 |
acgtagcacaagac |
212 |
Q |
| |
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|||||||||||||| |
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| T |
26315927 |
acgtagcacaagac |
26315940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 43110835 - 43110973
Alignment:
| Q |
1 |
tgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggt |
100 |
Q |
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|||||| |||| |||||||| |||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
43110835 |
tgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggt |
43110934 |
T |
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| Q |
101 |
tttgtcaaagtcgaaaaccactacaataatagccataat |
139 |
Q |
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| T |
43110935 |
tttgtcaaagtcaaaaaccacaacaatattagccataat |
43110973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 5269000 - 5268904
Alignment:
| Q |
22 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
118 |
Q |
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| T |
5269000 |
tgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaac |
5268904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 5249765 - 5249659
Alignment:
| Q |
22 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccac |
121 |
Q |
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| T |
5249765 |
tgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaattatggttttatcaaaatcaaaaactac |
5249666 |
T |
|
| Q |
122 |
tacaata |
128 |
Q |
| |
|
|||||| |
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|
| T |
5249665 |
aacaata |
5249659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 5276756 - 5276850
Alignment:
| Q |
24 |
ggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
118 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |||||||||| | ||| ||||| |||||||| || || || ||||||||||| || ||||| |
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| T |
5276756 |
ggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaac |
5276850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 5272783 - 5272878
Alignment:
| Q |
22 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaa |
117 |
Q |
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| T |
5272783 |
tgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaaagtcaaaaa |
5272878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 19569227 - 19569168
Alignment:
| Q |
29 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcaca |
88 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||||| |
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| T |
19569227 |
gagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcaca |
19569168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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