View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_45 (Length: 227)
Name: NF3593_high_45
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28238820 - 28238600
Alignment:
| Q |
1 |
ccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagccc |
100 |
Q |
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| T |
28238820 |
ccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagccc |
28238721 |
T |
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| Q |
101 |
aagtgtgaatgtcttgggtagactcatccaatttattaaaaagggaaaaaacagtggggtaagacccaactttaacaagggattctaaaacaaagttata |
200 |
Q |
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| T |
28238720 |
aagtgtgaatgtcttgggtagactcatccaatttattaaaaagggaaaaaacagtggggtaagacccaactttaacaagggattctaaaacaaagttata |
28238621 |
T |
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| Q |
201 |
atcggatatgggagccatacc |
221 |
Q |
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|| |||||||||||||||||| |
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| T |
28238620 |
attggatatgggagccatacc |
28238600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 47568890 - 47568782
Alignment:
| Q |
6 |
agtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtg |
105 |
Q |
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| T |
47568890 |
agtaggattatcaccggtgtcgatgattttatggaataaagagatatctgaagacattttaccttgtctagagtgacactggatgaggatagcccaagta |
47568791 |
T |
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| Q |
106 |
tgaatgtct |
114 |
Q |
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| T |
47568790 |
tgactgtct |
47568782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 23786781 - 23786715
Alignment:
| Q |
2 |
cagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
68 |
Q |
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| T |
23786781 |
cagcagtaggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacc |
23786715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 28231233 - 28231180
Alignment:
| Q |
6 |
agtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaaga |
59 |
Q |
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| T |
28231233 |
agtaggatgataaccggtgtcgatgattttattgaatagagagaaagctgaaga |
28231180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 28326035 - 28325923
Alignment:
| Q |
2 |
cagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagccca |
101 |
Q |
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| T |
28326035 |
cagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatgttaccatcgaaagcgtgagctttgatgaggattgtcca |
28325936 |
T |
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| Q |
102 |
agtgtgaatgtct |
114 |
Q |
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||| ||||||||| |
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| T |
28325935 |
agtatgaatgtct |
28325923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 6327145 - 6327212
Alignment:
| Q |
47 |
agatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtgtgaatgtct |
114 |
Q |
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| T |
6327145 |
agatagccgaagacatgttaccatggaaacagtgacatgtgatgaggattgaccaagtatgaatgtct |
6327212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 21159505 - 21159565
Alignment:
| Q |
8 |
taggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
68 |
Q |
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| T |
21159505 |
taggatgattaccggtgttgatgatattacagaatagagagatggcagaagacatgttacc |
21159565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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