View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_47 (Length: 216)
Name: NF3593_high_47
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 18896586 - 18896404
Alignment:
| Q |
16 |
atgaatgtcaataagttgaaattgatggatgcaaagatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgc |
115 |
Q |
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| T |
18896586 |
atgaatgtcaatcagttgaaattgatggatgcaaagatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgc |
18896487 |
T |
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| Q |
116 |
cttcaaaccaggatttagtgtaagaaaagggagggagttatattatgataatgagagaaaaatcacccgttttaaagagtttt |
198 |
Q |
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| T |
18896486 |
cttcaaaacaggatttagtgtaagaaaagggagggagttatattatgataatgagagaaaaatcacccgttttaaagagtttt |
18896404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 50094055 - 50094121
Alignment:
| Q |
49 |
aagatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgc |
115 |
Q |
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| T |
50094055 |
aagaaatttttctcagtcaagttctgaataaaatagatgaggcttataacttataacaagcatatgc |
50094121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 25941033 - 25941154
Alignment:
| Q |
50 |
agatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaaccaggatttagtgtaagaaaagggagg |
149 |
Q |
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| T |
25941033 |
agatatttatcttggtcaagttgtaaatagcaaagatgaagcttatgacttataccaagagcatgctttcaaaacaggttttagtgtaagaaaggggaag |
25941132 |
T |
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| Q |
150 |
gagttatattatgataatgaga |
171 |
Q |
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| T |
25941133 |
gagttatattatgataatgaga |
25941154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 17253510 - 17253676
Alignment:
| Q |
30 |
gttgaaattgatggatgcaaagatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaaccaggat |
129 |
Q |
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|||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||| | || | |
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| T |
17253510 |
gttgaaattgatgggtcagaagaaatttttcttggtcaagttgtcaataacaaagatgaagcttataacttataccaaaaatatgccttcagaaagggtt |
17253609 |
T |
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| Q |
130 |
ttagtgtaagaaaagggagggagttatattatgataatgagagaaaaatcacccgttttaaagagtttt |
198 |
Q |
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| T |
17253610 |
ttagtgtgggaaagggga--gagttatattatgataatgagagaaaaatgacacgtttcaaagagtttt |
17253676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 25031069 - 25030950
Alignment:
| Q |
50 |
agatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaaccaggatttagtgtaagaaaagggagg |
149 |
Q |
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||||||||||||||||||||||||| | | ||| |||||||||||||||||||| |||| ||||| |||||| || ||||||||||||||||||| | |
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| T |
25031069 |
agatatttttcttggtcaagttgtgcagagcaaggatgaagcttataacttataccaagaacatggcttcaagatgggttttagtgtaagaaaagggaag |
25030970 |
T |
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| Q |
150 |
gagttatattatgataatga |
169 |
Q |
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|| || || ||||||||||| |
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| T |
25030969 |
gaattgtactatgataatga |
25030950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 17965512 - 17965393
Alignment:
| Q |
50 |
agatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaaccaggatttagtgtaagaaaagggagg |
149 |
Q |
| |
|
||||||||||||||||||||||||| | | ||| |||||||||||||||||||| |||| ||||| |||||| || ||||||||||||||||||| | |
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| T |
17965512 |
agatatttttcttggtcaagttgtgcagagcaaggatgaagcttataacttataccaagaacatggcttcaagatgggttttagtgtaagaaaagggaag |
17965413 |
T |
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| Q |
150 |
gagttatattatgataatga |
169 |
Q |
| |
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|| || || ||||||||||| |
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| T |
17965412 |
gaattgtactatgataatga |
17965393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 14504321 - 14504396
Alignment:
| Q |
47 |
caaagatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaa |
122 |
Q |
| |
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||||||||| ||||||| |||||||||| || ||||||||||| |||||||||||| || ||||||||||||| |
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| T |
14504321 |
caaagatatatttcttgatcaagttgtgtttagtaaagatgaagcatataacttatatgaacaacatgccttcaaa |
14504396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 46204094 - 46204213
Alignment:
| Q |
50 |
agatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaaccaggatttagtgtaagaaaagggagg |
149 |
Q |
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||||||||||||||||||||||||| | | ||| |||||||||||||||||||| |||| ||||| |||||| || ||||||||||||||||||| | |
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| T |
46204094 |
agatatttttcttggtcaagttgtgcagagcaaggatgaagcttataacttataccaagaacatggcttcaagatgggttttagtgtaagaaaagggaag |
46204193 |
T |
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| Q |
150 |
gagttatattatgataatga |
169 |
Q |
| |
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|| || || ||||||||||| |
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| T |
46204194 |
gaattgtactatgataatga |
46204213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 27001106 - 27001228
Alignment:
| Q |
47 |
caaagatatttttcttggtcaagttgtgaataacaaagatgaagcttataacttatatcaagcacatgccttcaaaccaggatttagtgtaagaaaaggg |
146 |
Q |
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|||| ||||||||||||||||||||||| || ||| |||||||||||||| ||||| ||| ||||| |||||| || |||||||||||||||||| |
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| T |
27001106 |
caaatatatttttcttggtcaagttgtgcgtagcaaggatgaagcttataatttatactaagaacatggcttcaagatgggttttagtgtaagaaaaggg |
27001205 |
T |
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| Q |
147 |
agggagttatattatgataatga |
169 |
Q |
| |
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| ||| || || ||||||||||| |
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| T |
27001206 |
aaggaattgtactatgataatga |
27001228 |
T |
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