View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_high_6 (Length: 527)

Name: NF3593_high_6
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_high_6
NF3593_high_6
[»] chr8 (1 HSPs)
chr8 (20-527)||(29269889-29270383)
[»] scaffold0349 (3 HSPs)
scaffold0349 (20-361)||(17607-17948)
scaffold0349 (406-500)||(16852-16945)
scaffold0349 (360-404)||(16964-17008)
[»] chr6 (43 HSPs)
chr6 (20-361)||(27713996-27714337)
chr6 (54-283)||(27702263-27702492)
chr6 (68-283)||(26628004-26628219)
chr6 (68-283)||(26733981-26734196)
chr6 (123-275)||(26966104-26966256)
chr6 (141-275)||(27422504-27422638)
chr6 (65-274)||(26890066-26890275)
chr6 (26-273)||(26853623-26853868)
chr6 (406-500)||(27714999-27715092)
chr6 (124-283)||(26828358-26828517)
chr6 (104-275)||(26651110-26651281)
chr6 (104-275)||(26757078-26757249)
chr6 (94-275)||(26631460-26631641)
chr6 (94-275)||(26737435-26737616)
chr6 (177-284)||(26640665-26640772)
chr6 (177-284)||(26746631-26746738)
chr6 (280-361)||(26627707-26627788)
chr6 (280-361)||(26733684-26733765)
chr6 (190-283)||(31291368-31291461)
chr6 (101-186)||(31289405-31289490)
chr6 (443-527)||(25486959-25487042)
chr6 (443-527)||(26146557-26146640)
chr6 (280-348)||(27702670-27702738)
chr6 (436-527)||(26059595-26059685)
chr6 (436-527)||(26079565-26079655)
chr6 (40-227)||(27652145-27652339)
chr6 (213-283)||(27652343-27652413)
chr6 (26-139)||(26890567-26890680)
chr6 (443-511)||(25986741-25986808)
chr6 (360-404)||(27714936-27714980)
chr6 (280-347)||(27660703-27660770)
chr6 (280-340)||(26650492-26650552)
chr6 (280-340)||(26756460-26756520)
chr6 (435-527)||(27079034-27079125)
chr6 (463-527)||(27423905-27423968)
chr6 (280-338)||(26807072-26807130)
chr6 (280-332)||(26639748-26639800)
chr6 (280-332)||(26745714-26745766)
chr6 (443-497)||(25514427-25514480)
chr6 (280-342)||(27419460-27419522)
chr6 (24-100)||(26828527-26828603)
chr6 (280-348)||(26963723-26963791)
chr6 (435-527)||(27661929-27662020)
[»] scaffold0003 (3 HSPs)
scaffold0003 (141-275)||(64725-64859)
scaffold0003 (463-527)||(63395-63458)
scaffold0003 (280-342)||(67841-67903)
[»] chr4 (15 HSPs)
chr4 (24-183)||(18692334-18692494)
chr4 (93-239)||(5083123-5083269)
chr4 (280-361)||(18675056-18675137)
chr4 (280-361)||(18685629-18685710)
chr4 (278-361)||(18683371-18683454)
chr4 (280-361)||(18719586-18719667)
chr4 (280-348)||(18693111-18693179)
chr4 (51-183)||(18674282-18674423)
chr4 (280-348)||(18650937-18651005)
chr4 (280-342)||(18726883-18726945)
chr4 (282-348)||(5082450-5082516)
chr4 (93-183)||(18718903-18718993)
chr4 (250-283)||(18674450-18674483)
chr4 (250-283)||(18692521-18692554)
chr4 (250-283)||(18719020-18719053)
[»] chr1 (1 HSPs)
chr1 (157-242)||(26141211-26141296)
[»] scaffold0277 (1 HSPs)
scaffold0277 (189-239)||(824-874)


Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 20 - 527
Target Start/End: Original strand, 29269889 - 29270383
Alignment:
Q  20 ctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattac 119  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  29269889 ctctcatgcttcctttcttattgaacacgtagattccaaattgtgtactaagatggaaattcacaaagcactccaactgagctgcaaagcatatcattac 29269988  T
Q  120 taactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcct 219  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29269989 tcactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcct 29270088  T
Q  220 gacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctttcgaagtataaggat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29270089 gacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattataaccatttaagctttcgaagtataaggat 29270188  T
Q  320 cttatttgtaacaccattcatcttggatctggcactatttataaagtgttgcaataattgagatgttgcacatgccttgcatcatgtctcaatggtttat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29270189 cttatttgtaacaccattcatcttggatctggcactatttataaagtgttgcaataattgagatgttccacatgccttgcatcatgtctcaatggtttat 29270288  T
Q  420 aataatgataatgacgtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaag 519  Q
    ||||||||||||||||||||||||||||||||||||||||            |||||||||| ||||||||||||||||||||||||||||||||| |||    
T  29270289 aataatgataatgacgtaaacagcaaagcacaaacctgta------------agagaataac-aagaagacggttaactttataatggacctagactaag 29270375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 17948 - 17607
Alignment:
Q  20 ctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17948 ctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaagcatatcattac 17849  T
Q  120 taactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcct 219  Q
    |  ||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17848 tcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcct 17749  T
Q  220 gacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctttcgaagtataaggat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17748 gacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctttcgaagtataaggat 17649  T
Q  320 cttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17648 cttatttgtaacaccattcatcttggatctggcactatttat 17607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 406 - 500
Target Start/End: Complemental strand, 16945 - 16852
Alignment:
Q  406 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaacttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  16945 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgagattgagagaataac-aagaagacgattaacttt 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 17008 - 16964
Alignment:
Q  360 ataaagtgttgcaataattgagatgttgcacatgccttgcatcat 404  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  17008 ataaagtgttgcaataattgagatgttccacatgccttgcatcat 16964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 27713996 - 27714337
Alignment:
Q  20 ctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27713996 ctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaagcatatcattac 27714095  T
Q  120 taactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcct 219  Q
    |  ||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27714096 tcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcct 27714195  T
Q  220 gacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctttcgaagtataaggat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27714196 gacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctttcgaagtataaggat 27714295  T
Q  320 cttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27714296 cttatttgtaacaccattcatcttggatctggcactatttat 27714337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 283
Target Start/End: Original strand, 27702263 - 27702492
Alignment:
Q  54 tccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtg 153  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |||||||| ||||    
T  27702263 tccaaattgtgtactaagatggaaattctcaaagcactccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtg 27702362  T
Q  154 ctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatactta 253  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27702363 ctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatactta 27702462  T
Q  254 gttttggttagagaaaagttgcgtaaatta 283  Q
    ||||||||||||||||||||||||||||||    
T  27702463 gttttggttagagaaaagttgcgtaaatta 27702492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 26628219 - 26628004
Alignment:
Q  68 taagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctc 167  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||||| ||| ||| |||||||| | |||||||| |||  ||  |||||||||    
T  26628219 taagattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctc 26628120  T
Q  168 tagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagaga 267  Q
    ||||| | | |||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26628119 tagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagaga 26628020  T
Q  268 aaagttgcgtaaatta 283  Q
    ||||||||||||||||    
T  26628019 aaagttgcgtaaatta 26628004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 26734196 - 26733981
Alignment:
Q  68 taagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctc 167  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||||| ||| ||| |||||||| | |||||||| |||  ||  |||||||||    
T  26734196 taagattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctc 26734097  T
Q  168 tagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagaga 267  Q
    ||||| | | |||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26734096 tagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagaga 26733997  T
Q  268 aaagttgcgtaaatta 283  Q
    ||||||||||||||||    
T  26733996 aaagttgcgtaaatta 26733981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 26966256 - 26966104
Alignment:
Q  123 ctgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgac 222  Q
    ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| |||||||||||| | ||||||||||||||||||||  |||| |||||||    
T  26966256 ctgccctttcgaacaaccaacggattctgtggtgcaagcaatctctagacatgtcgcatgacagtgcaaatagccagatgactacagatggtgtcctgac 26966157  T
Q  223 aatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 275  Q
    ||||||||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  26966156 aatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttgc 26966104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 27422504 - 27422638
Alignment:
Q  141 aacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaac 240  Q
    |||||||| | ||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  27422504 aacggattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 27422603  T
Q  241 aagaaaatacttagttttggttagagaaaagttgc 275  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  27422604 aagtaaatgcttagttttcgttagagaaaagttgc 27422638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 65 - 274
Target Start/End: Complemental strand, 26890275 - 26890066
Alignment:
Q  65 tactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaac 164  Q
    ||||| |||||||||||||| | | || ||||||||||||||| |||| | ||||| |||||||||| |||||||  ||||||| |||| || || ||||    
T  26890275 tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattctgtggtgcgaacaac 26890176  T
Q  165 ctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttag 264  Q
    |||||||| | || ||||||| |  |||||||||||||||||||  | |||||||||||||||||||||||| || ||  ||||  ||||||||||||||    
T  26890175 ctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag 26890076  T
Q  265 agaaaagttg 274  Q
    ||||||||||    
T  26890075 agaaaagttg 26890066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 26853868 - 26853623
Alignment:
Q  26 tgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaactg 125  Q
    |||||||||  || ||||||| || | |||||| ||||||||||| |||||| |||||||| | || |||||| |||||||| |||||||||||| ||||    
T  26853868 tgcttccttcattcttgaacatgttggttccaatttgtgtactaaaattgaatttctcaaaactctacaactgggctgcaaagcatatcattactcactg 26853769  T
Q  126 ccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaat 225  Q
    |||||||||||| | ||| |||| |||| |||| |||||| |||||  | | | |||||||| |||||||||||||||| |||  |||  | ||||||||    
T  26853768 ccctttcgaacagccaacagattttgtggtgtgcgcaacccctagatatcttgaatgacaatgcaaatagccagatgaccacagatgg-atactgacaat 26853670  T
Q  226 gtacagtcaaagaacaagaaaatacttagttttggttagagaaaagtt 273  Q
    | || |||||||||||||  ||| ||||||||||||||||||||||||    
T  26853669 gcacggtcaaagaacaag-taattcttagttttggttagagaaaagtt 26853623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 406 - 500
Target Start/End: Original strand, 27714999 - 27715092
Alignment:
Q  406 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaacttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  27714999 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgagattgagagaataac-aagaagacgattaacttt 27715092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 124 - 283
Target Start/End: Complemental strand, 26828517 - 26828358
Alignment:
Q  124 tgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgaca 223  Q
    ||||||||||| ||||||||||||| |||| |  |||||||| |||||| |  ||||||||||| | ||||||||||| ||||||  |||  ||||||||    
T  26828517 tgccctttcgagcaacaaacggattttgtggtacgagcaaccactagacatcccgcatgacaatgcgaatagccagatcactacagatggactcctgaca 26828418  T
Q  224 atgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 283  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||||||  ||||||||    
T  26828417 atgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagttctgtaaatta 26828358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 104 - 275
Target Start/End: Complemental strand, 26651281 - 26651110
Alignment:
Q  104 caaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatga 203  Q
    |||| |||| ||||||| |||||||||||||||||| ||| |||| |||| || ||| || |||||||| | |||||||||||| || |||| ||| |||    
T  26651281 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga 26651182  T
Q  204 ctacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 275  Q
    |||||  ||||||||||||||||||||| |||||||||||  ||| | |||||||||||| |||||| ||||    
T  26651181 ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc 26651110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 104 - 275
Target Start/End: Complemental strand, 26757249 - 26757078
Alignment:
Q  104 caaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatga 203  Q
    |||| |||| ||||||| |||||||||||||||||| ||| |||| |||| || ||| || |||||||| | |||||||||||| || |||| ||| |||    
T  26757249 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga 26757150  T
Q  204 ctacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 275  Q
    |||||  ||||||||||||||||||||| |||||||||||  ||| | |||||||||||| |||||| ||||    
T  26757149 ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc 26757078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 26631641 - 26631460
Alignment:
Q  94 aactgagctgcaaatcatatcattactaactgccctttcgaacaac-aaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaa 192  Q
    ||||||||||| || |||| ||||||| |||||||||| ||||||  ||||||||| ||||||| ||||||||||||||| ||| | | |||||| |||     
T  26631641 aactgagctgcgaagcatagcattactcactgccctttggaacaagtaaacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaag 26631543  T
Q  193 tagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 275  Q
    | ||||||||||||||  ||| ||||||| |||||||| || |||| |||| |||| ||| ||||||||||||||||||||||    
T  26631542 tggccagatgactacagatggcttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttgc 26631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 26737616 - 26737435
Alignment:
Q  94 aactgagctgcaaatcatatcattactaactgccctttcgaacaac-aaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaa 192  Q
    ||||||||||| || |||| ||||||| |||||||||| ||||||  ||||||||| ||||||| ||||||||||||||| ||| | | |||||| |||     
T  26737616 aactgagctgcgaagcatagcattactcactgccctttggaacaagtaaacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaag 26737518  T
Q  193 tagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 275  Q
    | ||||||||||||||  ||| ||||||| |||||||| || |||| |||| |||| ||| ||||||||||||||||||||||    
T  26737517 tggccagatgactacagatggcttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttgc 26737435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 26640772 - 26640665
Alignment:
Q  177 cgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcg 276  Q
    ||||||||||| | ||||||||||| ||||||  |||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| | ||    
T  26640772 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccg 26640673  T
Q  277 taaattat 284  Q
    ||||||||    
T  26640672 taaattat 26640665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 26746738 - 26746631
Alignment:
Q  177 cgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcg 276  Q
    ||||||||||| | ||||||||||| ||||||  |||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| | ||    
T  26746738 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccg 26746639  T
Q  277 taaattat 284  Q
    ||||||||    
T  26746638 taaattat 26746631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 26627788 - 26627707
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  26627788 attatgattaaaagcatttatgctttcgaagtataaggatcttacttgtaacaccattcatcttggattcggcactatttat 26627707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 26733765 - 26733684
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  26733765 attatgattaaaagcatttatgctttcgaagtataaggatcttacttgtaacaccattcatcttggattcggcactatttat 26733684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 31291461 - 31291368
Alignment:
Q  190 aaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 283  Q
    |||||||||||||| ||||  |||||||||| ||||  ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31291461 aaatagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaatta 31291368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 31289490 - 31289405
Alignment:
Q  101 ctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaa 186  Q
    ||||||| |||| ||||||| |||||||||||||||||| |||||||| ||||||| |||||||| |||||| |||||||||||||    
T  31289490 ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgctgcgagcaaccactagacatgtcgcatgacaa 31289405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 527
Target Start/End: Complemental strand, 25487042 - 25486959
Alignment:
Q  443 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  25487042 caaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctagactaaggaatgtac 25486959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 527
Target Start/End: Complemental strand, 26146640 - 26146557
Alignment:
Q  443 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  26146640 caaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctagactaaggaatgtac 26146557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 27702670 - 27702738
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 348  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  27702670 attatgattaaaaccatttatgctttcgaagtataaagatcttacttgtaaaaccattcatcttggatc 27702738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 436 - 527
Target Start/End: Complemental strand, 26059685 - 26059595
Alignment:
Q  436 taaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    |||||| ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||    
T  26059685 taaacatcaaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctaaaccgaggaatgtac 26059595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 436 - 527
Target Start/End: Complemental strand, 26079655 - 26079565
Alignment:
Q  436 taaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    |||||| ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||    
T  26079655 taaacatcaaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctaaaccgaggaatgtac 26079565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 27652145 - 27652339
Alignment:
Q  40 ttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaa-----tcata--tcattactaactgccctttc 132  Q
    ||||||| || |||||||| ||||||||||||||||||||  | ||| | ||| ||||||||||||||     ||||   |||||| | ||||||||||     
T  27652145 ttgaacatgtggattccaatttgtgtactaagattgaaatcttaaaacctctcaaactgagctgcaaagaatgtcattattcattagtcactgccctttg 27652244  T
Q  133 gaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgt 227  Q
    ||||||| || ||||| |||| || ||||||  ||||||| | || ||||||||| |||||||||||||||| | |  |||||||||||||||||    
T  27652245 gaacaaccaatggattttgtggtgcgagcaatgtctagacatatcacatgacaatgcaaatagccagatgaccatagatggtttcctgacaatgt 27652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 27652343 - 27652413
Alignment:
Q  213 gtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 283  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  27652343 gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcgtatatta 27652413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 26890680 - 26890567
Alignment:
Q  26 tgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaactg 125  Q
    |||||||||| ||  ||||||| | |||||||| |||||||||| |||||||||||||| | | || ||| ||||||||||| |||| | ||||| ||||    
T  26890680 tgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaaatgagctgcaaagcataccgttactcactg 26890581  T
Q  126 ccctttcgaacaac 139  Q
    |||||| |||||||    
T  26890580 ccctttagaacaac 26890567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 25986808 - 25986741
Alignment:
Q  443 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacct 511  Q
    ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  25986808 caaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacct 25986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 27714936 - 27714980
Alignment:
Q  360 ataaagtgttgcaataattgagatgttgcacatgccttgcatcat 404  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  27714936 ataaagtgttgcaataattgagatgttccacatgccttgcatcat 27714980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 27660703 - 27660770
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggat 347  Q
    ||||||||||||| ||||||  ||||| |||||||||||||||| |||||||| ||||||||| ||||    
T  27660703 attatgattaaaagcatttattctttcaaagtataaggatcttacttgtaacaacattcatctaggat 27660770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 26650552 - 26650492
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcat 340  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| |||||||| |||||||    
T  26650552 attatgattaaaagcatttatggtttcaaagtataaggatcttacttgtaacaacattcat 26650492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 26756520 - 26756460
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcat 340  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| |||||||| |||||||    
T  26756520 attatgattaaaagcatttatggtttcaaagtataaggatcttacttgtaacaacattcat 26756460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 527
Target Start/End: Complemental strand, 27079125 - 27079034
Alignment:
Q  435 gtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    ||||||||||||||||||||||  | | |||| |||||||||||||| || |||| || |||| | |||||| |||||||| |||||||||||    
T  27079125 gtaaacagcaaagcacaaaccttcaatgttgagattgagagaataac-aacaagatggctaacctcataatgcacctagacaaaggaatgtac 27079034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 27423905 - 27423968
Alignment:
Q  463 ttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    |||| ||||||||||||||||  ||| ||||||||||||| ||| ||||||||||||||||||||    
T  27423905 ttgagattgagagaataacaacaaag-cggttaactttatgatgaacctagaccaaggaatgtac 27423968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 26807130 - 26807072
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattc 338  Q
    ||||||| ||||| |||||| |||||| |||||||||||||||| |||||||| |||||    
T  26807130 attatgactaaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 26807072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 26639800 - 26639748
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaaca 332  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| ||||||||    
T  26639800 attatgattaaaagcatttatgttttcaaagtataaggatcttacttgtaaca 26639748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 26745766 - 26745714
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaaca 332  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| ||||||||    
T  26745766 attatgattaaaagcatttatgttttcaaagtataaggatcttacttgtaaca 26745714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 25514480 - 25514427
Alignment:
Q  443 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaac 497  Q
    ||||||||||||||| | | |||| |||||||||||||| |||||||||||||||    
T  25514480 caaagcacaaacctgcaatgttgagattgagagaataac-aagaagacggttaac 25514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 27419460 - 27419522
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatct 342  Q
    |||||||||| ||  | ||| |||||| |||||||||||||||| |||||||| |||||||||    
T  27419460 attatgattataagaacttatgctttcaaagtataaggatcttacttgtaacagcattcatct 27419522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 26828603 - 26828527
Alignment:
Q  24 catgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgag 100  Q
    |||||||| |||||| ||| ||| || || ||||| |||| |||||||||||||||||| ||| | || ||||||||    
T  26828603 catgcttcatttcttcttggacaagtggaatccaatttgtatactaagattgaaattctgaaaactcttcaactgag 26828527  T

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Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 26963791 - 26963723
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 348  Q
    ||||||||||| | |||||  | |||| |||||||||||||||| |||||||| |||||| || |||||    
T  26963791 attatgattaagagcatttgtggtttcaaagtataaggatcttacttgtaacaacattcacctaggatc 26963723  T

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Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 27661929 - 27662020
Alignment:
Q  435 gtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    |||||||| |||||||||||||| |   |||| |||||||| ||||| || |||||||||||||||||   | |||| || ||||||||||||    
T  27661929 gtaaacagtaaagcacaaacctgcaaagttgagattgagaggataac-aacaagacggttaactttatggcgcacctggatcaaggaatgtac 27662020  T

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Target: scaffold0003 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 64859 - 64725
Alignment:
Q  141 aacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaac 240  Q
    |||||||| | ||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  64859 aacggattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 64760  T
Q  241 aagaaaatacttagttttggttagagaaaagttgc 275  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  64759 aagtaaatgcttagttttcgttagagaaaagttgc 64725  T

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Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 527
Target Start/End: Complemental strand, 63458 - 63395
Alignment:
Q  463 ttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtac 527  Q
    |||| ||||||||||||||||  ||| ||||||||||||| ||| ||||||||||||||||||||    
T  63458 ttgagattgagagaataacaacaaag-cggttaactttatgatgaacctagaccaaggaatgtac 63395  T

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Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 67903 - 67841
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatct 342  Q
    |||||||||| ||  | ||| |||||| |||||||||||||||| |||||||| |||||||||    
T  67903 attatgattataagaacttatgctttcaaagtataaggatcttacttgtaacagcattcatct 67841  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 18692334 - 18692494
Alignment:
Q  24 catgcttcctttcttgttgaacac-gtagattccaaattgtgtactaagattgaaattctcaaagcactccaactgagctgcaaatcatatcattactaa 122  Q
    |||||||  |||||| |||||||| || ||||| || |||| |||||||||||||||||||||| | ||||||||||| |||||| ||||||| |||| |    
T  18692334 catgctttttttcttcttgaacacagtggattctaatttgtctactaagattgaaattctcaaaactctccaactgaggtgcaaagcatatcaatactca 18692433  T
Q  123 ctgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatga 183  Q
    ||||||||||||||||| |||||||| ||   |  |||| |||| ||||||||||||||||    
T  18692434 ctgccctttcgaacaaccaacggattctgaagtacgagcgacctgtagacttgtcgcatga 18692494  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 5083269 - 5083123
Alignment:
Q  93 caactgagctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaattcaaa 192  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||   ||||||| ||||   ||||| |||||||||| | ||| |||||||| ||||    
T  5083269 caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtggattgagccacctctagacatctcgtatgacaatgcaaa 5083170  T
Q  193 tagccagatgactacatgtggtttcctgacaatgtacagtcaaagaa 239  Q
     |||||||  ||||||  |||||| ||| ||||||||||| ||||||    
T  5083169 aagccagacaactacagatggttttctgtcaatgtacagtaaaagaa 5083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 18675056 - 18675137
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||| ||||||    
T  18675056 attatgattaaaaccatttatgctttcaaagtataaggatcttacttgtaacaacattcatctaggatccggcacaatttat 18675137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 18685629 - 18685710
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||  |||||||| ||||| ||||| ||||||    
T  18685629 attatgattaaaaccatttatgctttcaaagtataaggatcttacttgtaacaaaattcatctaggatccggcacaatttat 18685710  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 18683371 - 18683454
Alignment:
Q  278 aaattatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| ||||||| | ||||| ||||| ||||||    
T  18683371 aaattatgattaaaacaatttatgctttcaaagtataaggatcttacttgtaacaacattcatgtaggatccggcacaatttat 18683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 18719586 - 18719667
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 361  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||  |||||||| ||||| ||||| ||||||    
T  18719586 attatgattaaaaccatttttgctttcaaagtataaggatcttacttgtaacaatattcatctaggatccggcacaatttat 18719667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 18693111 - 18693179
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 348  Q
    |||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||||||| |||||    
T  18693111 attatgattaaaaccatttatgctttcaaggtataaggatcttacttgtaacaacattcatctaggatc 18693179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 18674282 - 18674423
Alignment:
Q  51 gattccaaattgtgtactaagattgaaattctcaaagcactccaactgagc---------tgcaaatcatatcattactaactgccctttcgaacaacaa 141  Q
    |||||||| |||| |||||||||||||||||||||| | ||||||||||||         |||||| ||||||| |||| ||||||||||||| |||| |    
T  18674282 gattccaatttgtctactaagattgaaattctcaaaactctccaactgagctaactgaggtgcaaagcatatcaatactcactgccctttcgatcaacca 18674381  T
Q  142 acggattatgtgctgtgagcaacctctagacttgtcgcatga 183  Q
    |||||||  |   || |||| |||| ||||||||||||||||    
T  18674382 acggattcagcaatgcgagcgacctgtagacttgtcgcatga 18674423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 18650937 - 18651005
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 348  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| ||| |||| ||||||||| |||||    
T  18650937 attatgattaaaaccatttatactttcaaagtataaggatcttacttgcaacaacattcatctaggatc 18651005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 18726883 - 18726945
Alignment:
Q  280 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatct 342  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||  ||||||||    
T  18726883 attatgattaaaaccatttttgctttcaaagtataaggatcttacttgtaacaatattcatct 18726945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 5082516 - 5082450
Alignment:
Q  282 tatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 348  Q
    ||||||||||| ||||||  ||||| ||| |||||||||||| |||||||| | ||||||| |||||    
T  5082516 tatgattaaaagcatttatactttcaaagcataaggatcttacttgtaacagcgttcatctaggatc 5082450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 18718903 - 18718993
Alignment:
Q  93 caactgagctgcaaatcatatcattactaactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatga 183  Q
    |||||||| |||||| ||||||| |||| ||||||| |||||||||| ||| || | ||   || |||| |||| ||||||||||||||||    
T  18718903 caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaacagaatctgcagtgcgagcgacctttagacttgtcgcatga 18718993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 18674450 - 18674483
Alignment:
Q  250 cttagttttggttagagaaaagttgcgtaaatta 283  Q
    ||||||||||||||||||||||||| ||||||||    
T  18674450 cttagttttggttagagaaaagttgtgtaaatta 18674483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 18692521 - 18692554
Alignment:
Q  250 cttagttttggttagagaaaagttgcgtaaatta 283  Q
    ||||||||||||||||||||||||| ||||||||    
T  18692521 cttagttttggttagagaaaagttgtgtaaatta 18692554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 18719020 - 18719053
Alignment:
Q  250 cttagttttggttagagaaaagttgcgtaaatta 283  Q
    ||||||||||||||||||||||||| ||||||||    
T  18719020 cttagttttggttagagaaaagttgtgtaaatta 18719053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 26141296 - 26141211
Alignment:
Q  157 tgagcaacctctagacttgtcgcatgacaattcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaa 242  Q
    ||||| |||||||||| | | | |||||||| ||||||||||||  |||| |  |||||| ||||||||||||| |||||||||||    
T  26141296 tgagccacctctagacatctagaatgacaatgcaaatagccagacaactatagatggttttctgacaatgtacattcaaagaacaa 26141211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 824 - 874
Alignment:
Q  189 caaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaa 239  Q
    |||| ||||||| |||||||  ||||||||||||||||||| |||||||||    
T  824 caaaaagccagacgactacagatggtttcctgacaatgtactgtcaaagaa 874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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