View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_high_8 (Length: 488)
Name: NF3593_high_8
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 3 - 472
Target Start/End: Original strand, 40730097 - 40730566
Alignment:
| Q |
3 |
cagagaacttttatcttttgcatgatgttatatgtagaatgttaacttggacatcatttcaaatctaattatatgaatcttttaggatgaaggtttggat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40730097 |
cagagaacttttatcttttgcatgatgttatatgtagaatgttaacttggacatcatttcaaatctaattatatgaatcttttaggatgaaggtttggat |
40730196 |
T |
|
| Q |
103 |
gtgattgcagaaggattggatactttgaaaaacatggcacacgatatgaacgaggtcagattgcctattgtgtttgtctttcatcctttgcgtgtgtgat |
202 |
Q |
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| T |
40730197 |
gtgattgcagaaggattggatactttgaaaaacatggcacacgatatgaacgaggtcagattgcctattgtgtttgtctttcatcctttgcgtgtgtgat |
40730296 |
T |
|
| Q |
203 |
atatttatttgaatgtttaagtttgtcaaatgcaggaatttgataggcaagttccactgatggatgagattgatactaaggtgagattcctgtaaattga |
302 |
Q |
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| T |
40730297 |
atatttatttgaatgtttaagtttgtcaaatgcaggaatttgataggcaagttccactgatggatgagattgatactaaggtgagattcctgtaaattga |
40730396 |
T |
|
| Q |
303 |
agactctggaaacactaaaattgaagttctcaaaactctgtaaataggaagctgaagttaacacaatgctattattttttgttttatataggtagacaag |
402 |
Q |
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| T |
40730397 |
agactctggaaacactaaaattgaagttctcaaaactctgtaaataggaagctgaagttaacacaatgctattattttttgttttatataggtagacaag |
40730496 |
T |
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| Q |
403 |
gcatcttctgaccttaagaataccaacgttagacttaaagacacagttacccaggttactaactcattca |
472 |
Q |
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| T |
40730497 |
gcatcttctgaccttaagaataccaacgttagacttaaagacacagttacccaggttactaactcattca |
40730566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 36085900 - 36085643
Alignment:
| Q |
14 |
tatcttttgcatgatgttatatgtagaatgttaacttggacatcatttcaaatctaattatatgaatcttttaggatgaaggtttggatgtgattgcaga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36085900 |
tatcttttgcatgatgttatatgtagaatgttaacttggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtaga |
36085801 |
T |
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| Q |
114 |
aggattggatactttgaaaaacatggcacacgatatgaacgaggtcagattgcctattgtgtttgtctttcatcctttgcgtgtgtgatatatttatttg |
213 |
Q |
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| T |
36085800 |
aggattggatactttgaaaaacatggcacacgatatgaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttg |
36085701 |
T |
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| Q |
214 |
aatgtttaagtttgtcaaatgcaggaatttgataggcaagttccactgatggatgaga |
271 |
Q |
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| T |
36085700 |
aatgtttaagtttgctaaatacaggaatttgataggcaagttttactgatggatgaga |
36085643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 28511149 - 28511073
Alignment:
| Q |
85 |
taggatgaaggtttggatgtgattgcagaaggattggatactttgaaaaacatggcacacgatatgaacgaggtcag |
161 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| || || ||||| |||||||| |
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| T |
28511149 |
taggatcaaggtttggatatgattgcagaaggattggatactttgaaagacatggcgcatgacatgaatgaggtcag |
28511073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 28510812 - 28510743
Alignment:
| Q |
392 |
aggtagacaaggcatcttctgaccttaagaataccaacgttagacttaaagacacagttacccaggttac |
461 |
Q |
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|||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |||||||||| |||||||| |
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| T |
28510812 |
aggtggacaaagcatcctctgatcttaagaatactaatgttagacttaaggacacagttaatcaggttac |
28510743 |
T |
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