View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_12 (Length: 463)
Name: NF3593_low_12
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 289620 - 289391
Alignment:
| Q |
5 |
tatgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatg |
104 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
289620 |
tatgactagattcacttcctaccttaaaatggttttttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatg |
289521 |
T |
|
| Q |
105 |
gttggtttcttaa-gaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatttatttgtactcctaaata |
203 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
289520 |
gttggtttcttaaagaaatataatggttggttaacagttttattctgcattaattgtgcatttcagtttatctcatcatatttatttgtactcctaaata |
289421 |
T |
|
| Q |
204 |
ttgtcttattgaacttgctatacattatta |
233 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
289420 |
ttgtcttattgaacttgctatacattatta |
289391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 337 - 452
Target Start/End: Complemental strand, 289287 - 289172
Alignment:
| Q |
337 |
caatatcatgtcgttgcattttaatggatttaaacccgctaccggtcccaactaatcagaatgaaatattttataagcaaagccatgccatcattgtcat |
436 |
Q |
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||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
289287 |
caataccatgtcgttgcattttaatggatttaaacccgtcactgctcccaactaatcagaatgaaatattttataagcaaagccatgccattattgtcat |
289188 |
T |
|
| Q |
437 |
tacactttatctctct |
452 |
Q |
| |
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|||||||||||||||| |
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| T |
289187 |
tacactttatctctct |
289172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 24531354 - 24531129
Alignment:
| Q |
6 |
atgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatgg |
105 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||| |||||| |
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| T |
24531354 |
atgattagattcacttcctaccttaaaatggttttttggttgaggttttcttacttaaaaatattggttggctgtgaattgtcgttttctaacatgatgg |
24531255 |
T |
|
| Q |
106 |
ttggtttcttaagaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatt-tatttgtactcctaaatat |
204 |
Q |
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||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||| |
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| T |
24531254 |
ttggttttgtaaaaaatttaatggttggttaacagttttattctgcattaattgtgcactagagtttagctcatcatattatatttgtactcctaaatat |
24531155 |
T |
|
| Q |
205 |
tgtcttattgaacttgctatacatta |
230 |
Q |
| |
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|||| |||||||||| |||||||||| |
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| T |
24531154 |
tgtcctattgaactttctatacatta |
24531129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 24523929 - 24523704
Alignment:
| Q |
6 |
atgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatgg |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||| |
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| T |
24523929 |
atgattagattcacttcctaccttaaaatgattttttggttgaggttttcttacttaaaaatattggttggttgtgaattgtcgttttctaacatgatgg |
24523830 |
T |
|
| Q |
106 |
ttggtttcttaagaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatt-tatttgtactcctaaatat |
204 |
Q |
| |
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||||||| ||| |||| |||| |||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||||| |
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| T |
24523829 |
ttggttttgtaaaaaatttaatagttggttaacagttttattctgcattaactgtgcactagagtttagctcatcatattatatttgtactcctaaatat |
24523730 |
T |
|
| Q |
205 |
tgtcttattgaacttgctatacatta |
230 |
Q |
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|||| ||||| ||| |||||||||| |
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| T |
24523729 |
tgtcctattgccctttctatacatta |
24523704 |
T |
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