View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_14 (Length: 415)
Name: NF3593_low_14
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_14 |
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| [»] chr4 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 78 - 415
Target Start/End: Complemental strand, 4222798 - 4222453
Alignment:
| Q |
78 |
ttggagaaccgaccaatggcatggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattttga--------ggga |
169 |
Q |
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| T |
4222798 |
ttggagaaccgaccaatggcatggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattttgaactcatgaggga |
4222699 |
T |
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| Q |
170 |
tgcaccgtccataggagatgaattgcttaatagaatgaaagtgactttacattgtgttgatcctttaccttctgatagacctgaagttaaatacgttttg |
269 |
Q |
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| T |
4222698 |
tgcaccgtccataggagatgaattgcttaatagaatgaaattggctttacattgtgttgatcctttaccttctgatagacctaaagttaaatacgttttg |
4222599 |
T |
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| Q |
270 |
tagtaattagaagagaataagttgaagttggagctaaggtttaacaaatgaataaagtgaagtaaagtttgtgttacttgaattagtggagaaaggatga |
369 |
Q |
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| T |
4222598 |
tagtaattagaagagaataagttgaagttggagctaaggtttaacaaatgaataaagtgaagtaaagtttgtgttacttgaattagtggagaaaggatga |
4222499 |
T |
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| Q |
370 |
tacatttaataccccgcatgtaaaaatttagtataagttattttat |
415 |
Q |
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| T |
4222498 |
tacatttaataccccgcatgtaaaaatttagtataagttattttat |
4222453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 3908084 - 3908297
Alignment:
| Q |
80 |
ggagaaccgaccaatggcatggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattt--------tgagggatg |
171 |
Q |
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| T |
3908084 |
ggagaaccaacaaatggaatggacttgcctcaatatgttgcatccattgttaaagaagagtggacaaatgaagtgtttgatttggaactcatgagggatg |
3908183 |
T |
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| Q |
172 |
caccgtccataggagatgaattgcttaatagaatgaaagtgactttacattgtgttgatcctttaccttctgatagacctgaagttaaatacgttttgta |
271 |
Q |
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| T |
3908184 |
gaccaaccataggagatgaacttcttaatacattgaaattagctttgcattgtgttgatccatcaccttctgctaggcctgaggttaaacaagttttgca |
3908283 |
T |
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| Q |
272 |
gtaattagaagaga |
285 |
Q |
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| T |
3908284 |
gcaattagaagaga |
3908297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 4222886 - 4222817
Alignment:
| Q |
11 |
cagagattttaaccacaaagaaacctaccatgcacatcgacccatatttacagcttttgttatccttttggaga |
84 |
Q |
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| T |
4222886 |
cagagattttaaccacaaagaaacctacca----caacgacccatatttacagcttttgttatccttttggaga |
4222817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 3924118 - 3924288
Alignment:
| Q |
98 |
atggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattt--------tgagggatgcaccgtccataggagatg |
189 |
Q |
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| T |
3924118 |
atggacttgcctcaatatgttgcatccattgttaaagaagaatggacaaatgaagtgtttgatttggaactcatgagggatggaccaaccataggagatg |
3924217 |
T |
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| Q |
190 |
aattgcttaatagaatgaaagtgactttacattgtgttgatcctttaccttctgatagacctgaagttaaa |
260 |
Q |
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| T |
3924218 |
aacttcttaatacattgaaattagctttgcattgtgttgatccatcaccttctgctaggcctgaagttaaa |
3924288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 1508018 - 1507979
Alignment:
| Q |
376 |
taataccccgcatgtaaaaatttagtataagttattttat |
415 |
Q |
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| T |
1508018 |
taataccccgcatgtaaaaattcagtataagttattttat |
1507979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 19804409 - 19804370
Alignment:
| Q |
376 |
taataccccgcatgtaaaaatttagtataagttattttat |
415 |
Q |
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| T |
19804409 |
taataccccgcatgtaaaaattcagtatcagttattttat |
19804370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 22212505 - 22212466
Alignment:
| Q |
376 |
taataccccgcatgtaaaaatttagtataagttattttat |
415 |
Q |
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| T |
22212505 |
taataccccacatgtaaaaatttagtataagttcttttat |
22212466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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