View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_17 (Length: 386)
Name: NF3593_low_17
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35178164 - 35177788
Alignment:
| Q |
1 |
tcttcctattaagagtatgtttcttcctaaatgcagttaatgctgacaacattagcatctccaatcaataggaattgggattgatgatgttgtttgtaac |
100 |
Q |
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| T |
35178164 |
tcttcctattaagagtatgtttcttcctaaatgcagttaatgctgacaacattagcatctccaatcaataggaattgggagtgatgatgttgtttgtaac |
35178065 |
T |
|
| Q |
101 |
nnnnnnnccctagtcatattgatttaaattaataaattacaataa-ctatagagtaatatttttcattctttctgtgcaagattgattttcaagtaatat |
199 |
Q |
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| T |
35178064 |
tttttttccctagtcatattgatttaaattaataaattacaataaactatagagtaatatttttcattctttctgtgcaagattgattttcaagtaatat |
35177965 |
T |
|
| Q |
200 |
cattcatcttttatcatatcagttggcaggaaatttaaattatttaccttttgttttggcttaatgagcccgttgagtgaagccttatgcaaaattcttg |
299 |
Q |
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| T |
35177964 |
cattcatcttttatcatatcagttggcaggaaatttaaattatttaccttttgttttggcttaatgagcccgttgagtgaagccttatgcaaaattcttg |
35177865 |
T |
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| Q |
300 |
ttagcaaatatatgtggtgctattgtaatttgtaaatgtttaaaattgatcaactttagatgattattgtccctatg |
376 |
Q |
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| T |
35177864 |
ttagcaaatatatgtggtgctattgtaatttgtaaatgtttaaaattgatcaactttagatgattattgtcactatg |
35177788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 113 - 376
Target Start/End: Complemental strand, 35181921 - 35181664
Alignment:
| Q |
113 |
gtcatattgatttaaattaataaattacaataa-ctatagagtaatatttttcattctttctgtgcaagattgattttcaagtaatatcattcatctttt |
211 |
Q |
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| T |
35181921 |
gtcatatttatttaaattaataattataaataaactatatagttgtatttttcattgcttctgtgcaagattgatttacaagtagtaccattcatcttt- |
35181823 |
T |
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| Q |
212 |
atcatatcagttggcaggaaatttaaattatttaccttttgttttggcttaatgagcccgttgagtgaagccttatgcaaaattcttgttagcaaatata |
311 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
35181822 |
atcatatcagctggcaggaaatttaaacgatttaccttttgttttgacttaatgcgcctgttgagtgaagccttatgcaaaattcttgtcagcaaatata |
35181723 |
T |
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| Q |
312 |
tgtggtgctattgtaatttgtaaatgtttaaaattgatcaactttagatgattattgtccctatg |
376 |
Q |
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| T |
35181722 |
tatggtgctattgtaatt------tgattaaaattgatcaactttagattattattgtcactatg |
35181664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35182075 - 35182013
Alignment:
| Q |
1 |
tcttcctattaagagtatgtttcttcctaaatgcagttaatgctgacaacattagcatctcca |
63 |
Q |
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| T |
35182075 |
tcttcctattaagagtatgtttcttcctaaatgcagtcaatgctgacaacattagcatctcca |
35182013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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