View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_2 (Length: 562)
Name: NF3593_low_2
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 6 - 541
Target Start/End: Original strand, 39242510 - 39243045
Alignment:
| Q |
6 |
agaacctgtggcggtacagtggatttggttaccctcaagaaggcttaaattgatatcattgtaccactttttgttgttttcttgtgtttcagcaacacaa |
105 |
Q |
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| T |
39242510 |
agaacctatggcggtacaatggatttggttaccctcaagaaggcttaaattgatatcattgtaccactttttgttgttttcttgtgtttcagcaacacaa |
39242609 |
T |
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| Q |
106 |
gttgatttacatgtataatgtctgtaatatataatggaaatgaaacacaggaagacttttgtagttattgtaaagaaaaaaggaagacttttgtagttat |
205 |
Q |
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| T |
39242610 |
gttgatttacatgtataatgtctgtaatatataatggaaatgaaacacaggaagacttttgtagttattgtaaagaaaaaaggaagacttttgtagttat |
39242709 |
T |
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| Q |
206 |
tactgcactttgctctttaaactccaacatctctaaattaatcaaatcacgttctcatcaatgtttttactagggtctctttgaatacgtttgtcacatt |
305 |
Q |
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| T |
39242710 |
tactgcactttgctctttaaactccaacatctctaaattaatcaaatcacgttctcatcaatgtttttactagggtctctttgaatacgtttgtcacatt |
39242809 |
T |
|
| Q |
306 |
atgtgacactgattttggacacagtaaaattgtgacaccttttgaggacctaggttgagtctgatattgctattttgggattttagtgttgttgaacaaa |
405 |
Q |
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| T |
39242810 |
atgtgacactgattttggacacagtaaaattgtgacaccttttgaggacctagattgagtctgatattgctattttgggattttagtgttgttgaacaaa |
39242909 |
T |
|
| Q |
406 |
ttcaggatcaacaatgatctaaaaggaatattttctgttacggagcaaaatgatatataatagaatgactttgtaattttatttccacatacacacacca |
505 |
Q |
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| T |
39242910 |
ttcaggatcaacaatgatctaaaaggaatattttctgttacggtgcaaaatgatatagaatagaatgacagtataattttatttccacatacacacacca |
39243009 |
T |
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| Q |
506 |
tagtacaaatggaagttttcacaagatagataacat |
541 |
Q |
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| T |
39243010 |
tagtacaaatggaagttttcacaagatagataacat |
39243045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 808902 - 809020
Alignment:
| Q |
25 |
tggatttggttaccctcaagaaggcttaaattgata--------tcattgtaccactttttgttgttttcttgtgtttcagcaacacaagttgatttaca |
116 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||| |||||| ||| || | ||||||||||||| |
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| T |
808902 |
tggatttggttaccctcaagaaggcataaattgataataatgtatcattgtacctattttagttgttttcctgtgttccag-aatagaagttgatttaca |
809000 |
T |
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| Q |
117 |
tgtataatgtctgtaatata |
136 |
Q |
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| T |
809001 |
tgtataatgtttgtaatata |
809020 |
T |
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