View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_low_21 (Length: 363)

Name: NF3593_low_21
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_low_21
NF3593_low_21
[»] chr3 (2 HSPs)
chr3 (18-349)||(289790-290121)
chr3 (53-262)||(279432-279641)
[»] chr2 (2 HSPs)
chr2 (40-349)||(24524844-24525153)
chr2 (40-349)||(24531517-24531826)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 290121 - 289790
Alignment:
Q  18 gtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttccccca 117  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  290121 gtttactcgggctaccaccttctacgccccaccaaaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgcttttcccca 290022  T
Q  118 aatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  290021 aatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaat 289922  T
Q  218 gtccctttgcctagtaaggtgtcttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcag 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  289921 gtccctttgcctagtaaggtgtcttgcattggttcggatgcccattcccacttgagtgtgtttcctaatgaacaagtacacaacaatgctaaacatgcag 289822  T
Q  318 taagaaatgtacgaaacctaggattagacata 349  Q
    |||||||| ||| |||||| ||||||||||||    
T  289821 taagaaatatactaaaccttggattagacata 289790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 53 - 262
Target Start/End: Complemental strand, 279641 - 279432
Alignment:
Q  53 aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt 152  Q
    |||||||||||| || ||||||||||| ||||| ||||||  || |||| | |||||||||||||| | ||||| ||||||||||| |||||||||||||    
T  279641 aatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccccaagtgtttgtatcatttacgacaacttcggtcatgt 279542  T
Q  153 accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcattggttc 252  Q
    |||| || ||||||||||  ||| | |||||| |||||||||||||||||| ||||||||||||||||||||| ||| | || ||||||| |||||| ||    
T  279541 accacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtc 279442  T
Q  253 agatgcccat 262  Q
     |||| ||||    
T  279441 ggatgtccat 279432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 40 - 349
Target Start/End: Complemental strand, 24525153 - 24524844
Alignment:
Q  40 tacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgact 139  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||||| ||  || |||||  ||| |||||||||||   |||||||||||||||||    
T  24525153 tacaccccaccaaaatccattaatatatgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacagttgtgtcatttacgact 24525054  T
Q  140 acttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgt 239  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24525053 acttcggtcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgt 24524954  T
Q  240 cttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctagg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24524953 cttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctagg 24524854  T
Q  340 attagacata 349  Q
    ||||||||||    
T  24524853 attagacata 24524844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 349
Target Start/End: Complemental strand, 24531826 - 24531517
Alignment:
Q  40 tacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgact 139  Q
    |||||||||||| |||||||||||||| ||||||| |||||| ||||||| ||  || |||||  ||| |||||||||||   |||||||||||||||||    
T  24531826 tacaccccaccaaaatccattaatatacgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacggttgtgtcatttacgact 24531727  T
Q  140 acttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24531726 acttcggtcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgt 24531627  T
Q  240 cttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctagg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24531626 cttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctagg 24531527  T
Q  340 attagacata 349  Q
    ||||||||||    
T  24531526 attagacata 24531517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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