View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_low_24 (Length: 333)

Name: NF3593_low_24
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_low_24
NF3593_low_24
[»] chr4 (2 HSPs)
chr4 (1-307)||(7653066-7653372)
chr4 (252-300)||(9109680-9109728)
[»] chr2 (1 HSPs)
chr2 (14-308)||(33172213-33172521)
[»] chr5 (1 HSPs)
chr5 (26-308)||(21902864-21903158)
[»] chr7 (2 HSPs)
chr7 (141-307)||(11362637-11362816)
chr7 (14-83)||(40646876-40646945)
[»] chr6 (1 HSPs)
chr6 (141-291)||(4059602-4059765)
[»] chr3 (2 HSPs)
chr3 (227-308)||(20592339-20592420)
chr3 (198-238)||(20592297-20592337)
[»] chr1 (1 HSPs)
chr1 (15-73)||(40130057-40130115)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7653066 - 7653372
Alignment:
Q  1 tcactcttacattattattctttgatgaaccacactaacttgacaatacgaaattgcagttagcattgaaaccaaactgcagcaatacatatactattta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7653066 tcactcttacattattattctatgatgaaccacactaacttgacagtacgaaattgcagttagcattgaaaccaaactgcagcaataaatatactattta 7653165  T
Q  101 ttttccttctaacaataatcaacacagattcaaaataaaaaacgaaaatcaatttacctataacaattacaattacgattcaacacaaagttgacaatta 200  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7653166 ttttccttctaacagtaatcaacacagattcaaaatcaaaaacgaaaatcaatttacctataacaattaaaattacgattcaacacaaagttgacaatta 7653265  T
Q  201 caattaaagtttacctagagcaattcaaaatcaaaaacaattaaacaattgaaaaacacagagattagaagatttgcctagaaattacgattttgcggcg 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  7653266 caattaaagtttacctagaacaattcaaaatcaaaaacaattaaacaattgaaaaacacagagattagaagatttacctagaaattacgatttcgcggcg 7653365  T
Q  301 acgaaga 307  Q
    |||||||    
T  7653366 acgaaga 7653372  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 9109680 - 9109728
Alignment:
Q  252 aaaaacacagagattagaagatttgcctagaaattacgattttgcggcg 300  Q
    |||||||||||||||| | ||||| ||||||||||||||||| ||||||    
T  9109680 aaaaacacagagattacaggatttacctagaaattacgatttcgcggcg 9109728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 33172521 - 33172213
Alignment:
Q  14 attattctttgatgaaccacactaacttgacaatacgaaattgcagttagcattgaaaccaaactgcagcaatacatatactatttattttccttctaac 113  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  33172521 attattctttgatgaaccacactaacttgacagtacgaaattgcagttagcactgaaaccaaactgcagcaatacatatactgtttattttccttctaac 33172422  T
Q  114 aataatcaacacagattcaaaataaaaaacgaaaatcaatttacctataacaattacaattacgattcaacacaaagttgacaattacaattaaagttta 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||    
T  33172421 aataatcaacacagattcaaaatcaaaaacgaaaatcaatttacttataacaattaaaattacgattctacacaaagttgataattacaattaaaattta 33172322  T
Q  214 cctagagcaattcaaaatcaa--------------aaacaattaaacaattgaaaaacacagagattagaagatttgcctagaaattacgattttgcggc 299  Q
    |||||| ||||||||||||||              ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  33172321 cctagaacaattcaaaatcaaaaacgaaaaataaaaaacaattaaacaattgaaaaacacagagattagaagatttacctagaaattacgatttcgcggc 33172222  T
Q  300 gacgaagac 308  Q
    || ||||||    
T  33172221 gatgaagac 33172213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 26 - 308
Target Start/End: Original strand, 21902864 - 21903158
Alignment:
Q  26 tgaaccacactaacttgacaatacgaaattgcagttagcattgaaaccaaactgcagcaatacatatactatttattttccttctaacaataatcaacac 125  Q
    ||||||||||||| |||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  21902864 tgaaccacactaaattgacagtatgaaattgcagttagcactgaaaccaaactacagcaatacatatactgtttattttccttctaacagtaatcaacac 21902963  T
Q  126 agattcaaaataaaaaacgaaaatcaatttacctataacaattacaattacgattcaacacaaagttgacaattacaattaaagtttacctagagcaatt 225  Q
    |  |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||    
T  21902964 a--ttcaaaatcaaaaacgaaaatcaatttacctataataattaaaattacgattcaacacaaacttgataattacaattaaaatttacctagaacaatt 21903061  T
Q  226 caaaatc--------------aaaaacaattaaacaattgaaaaacacagagattagaagatttgcctagaaattacgattttgcggcgacgaagac 308  Q
    |||||||              ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  21903062 caaaatcaaaaacgaaaaataaaaaacaattaaacaattgaaaaacacagagattagaagatttacctagaaattacgatttcgcggtgacgaagac 21903158  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 141 - 307
Target Start/End: Complemental strand, 11362816 - 11362637
Alignment:
Q  141 aacgaaaatcaatttacctataacaattacaattacgattcaacacaaagttgacaattacaattaaagtttacctagagcaattcaaaatcaa------ 234  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||          
T  11362816 aacgaaaatcaatttacctataacaattaaaattaccattcaacacaaagttgataattacaattaaaatttacctacaacaattcaaaatcaaaaacga 11362717  T
Q  235 -------aaacaattaaacaattgaaaaacacagagattagaagatttgcctagaaattacgattttgcggcgacgaaga 307  Q
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  11362716 aaataaaaaacaattaaacaattgaaaaacacagagattagaagatttacctagaaattacgatttcgcagcgacgaaga 11362637  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 40646876 - 40646945
Alignment:
Q  14 attattctttgatgaaccacactaacttgacaatacgaaattgcagttagcattgaaaccaaactgcagc 83  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||| ||||    
T  40646876 attattctctgatgaaccacactaacttgacagtacgaaatggcagttagcactgaaaacaaactacagc 40646945  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 4059765 - 4059602
Alignment:
Q  141 aacgaaaatcaatttacctataacaattacaattacgattcaacacaaagttgacaattacaattaaagtttacctagagcaattcaaaatcaa------ 234  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||          
T  4059765 aacgaaaatcaatttacctataacaattaaaattaccattcaacacaaagttgataattacaattaaaatttacctacaacaattcaaaatcaaaaacga 4059666  T
Q  235 -------aaacaattaaacaattgaaaaacacagagattagaagatttgcctagaaattacgat 291  Q
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4059665 aaataaaaaacaattaaacaattgaaaaacacagagattagaagatttacctagaaattacgat 4059602  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 20592339 - 20592420
Alignment:
Q  227 aaaatcaaaaacaattaaacaattgaaaaacacagagattagaagatttgcctagaaattacgattttgcggcgacgaagac 308  Q
    ||||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||    
T  20592339 aaaataaaaaataattaaacaattgaaaaacacagagattacaggatttacctagaaattacgatttcgcggcgacgaagac 20592420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 20592297 - 20592337
Alignment:
Q  198 ttacaattaaagtttacctagagcaattcaaaatcaaaaac 238  Q
    |||| |||||| |||||||||| ||||||||||||||||||    
T  20592297 ttacgattaaaatttacctagaacaattcaaaatcaaaaac 20592337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 40130115 - 40130057
Alignment:
Q  15 ttattctttgatgaaccacactaacttgacaatacgaaattgcagttagcattgaaacc 73  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  40130115 ttattctctgatgaaccacactaacttgacagtaccaaattgcagttagcactgaaacc 40130057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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