View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_25 (Length: 332)
Name: NF3593_low_25
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 45746675 - 45746373
Alignment:
| Q |
18 |
tccacaacaaggttgcctaagctgcttttgtttgtgattctccataatatcaaagattacaaatttgatttaaaaacttgttaaacacaacagttattgc |
117 |
Q |
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| T |
45746675 |
tccacaacaaggttgcctaagccgcttttgtttgtgattctccataatatcaaagattacaaatgtgatttaaaaacttgttaaacacaacagttattgc |
45746576 |
T |
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| Q |
118 |
atttgtattaatatagatactgtaatttgtaacaattaactgactttgtttttgttgaatcagactcaactggaaaggcatgagaacataatgcttaggc |
217 |
Q |
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| T |
45746575 |
atttgtattaatatagatactgtaatttgtaacaattaactgactttgtttttgttgaatcagactcaactggaaaggcatgagaacataatgcttaggc |
45746476 |
T |
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| Q |
218 |
aggaaaatgacaagctaagaggggagaatagcatgatgaaagaagcaatggtgaatccaatatgtaacaactgtggtggaccagcaattcctggccaaat |
317 |
Q |
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| T |
45746475 |
aggaaaatgacaagctaagaggggagaatagcatgatgaaagaagcaatggtgaatccaatatgtaacaactgtggtggaccagcaattcctggccaaat |
45746376 |
T |
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| Q |
318 |
att |
320 |
Q |
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| T |
45746375 |
att |
45746373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 12326930 - 12326862
Alignment:
| Q |
179 |
agactcaactggaaaggcatgagaacataatgcttaggcaggaaaatgacaagctaagaggggagaata |
247 |
Q |
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| T |
12326930 |
agactcaattggaaaggcatgagaacaatttgcttaggcaagagaatgataagcttagagctgagaata |
12326862 |
T |
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