View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3593_low_27 (Length: 305)
Name: NF3593_low_27
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 24571245 - 24570966
Alignment:
| Q |
16 |
caagtgcaccctttgcaaggattatcgacaacttcaactggtattccatccaaaagctatccaagacaatccatctcatgcaatcttataacttcatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24571245 |
caagtgcaccctttgcaaggattatcgacaacttcaactggtattccatccaaaagctatccaagacaatccatctcatgcaatcttataacttcatcaa |
24571146 |
T |
|
| Q |
116 |
ctcctccaatgtacctttctattatgaaaagctttagaggaatcacttttccaccaaaattcttctacaattcctctctatattccaaatgtagagaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24571145 |
ctcctccaatgtacctttctattatgaaaagctttagaggaatcacttttccaccaaaattcttctacaattcctctctatattccaaatgtagagaaac |
24571046 |
T |
|
| Q |
216 |
accttttattgtgttgcaatcatgaaatgtttttcttatacctctcaagcttgatttgaagagaattacccctttgcttc |
295 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
24571045 |
accttttattctgttgcaatcatgaaatgtttttcttatacctctcaagcaggatttgaagagaattaccccttggcttc |
24570966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 43357618 - 43357508
Alignment:
| Q |
54 |
tggtattccatccaaaagctatccaagacaatccatctcatgcaatcttataacttcatcaactcctccaatgtacctttctattatgaaaagctttaga |
153 |
Q |
| |
|
|||| |||| ||||||| || |||||| ||| |||| |||||||| | | ||||||||| ||||||||||||| ||| || | || ||||||||| || |
|
|
| T |
43357618 |
tggtgttccttccaaaatctttccaagccaacccatttcatgcaaaccaaacacttcatcagctcctccaatgtatcttcctctgataaaaagctttgga |
43357519 |
T |
|
| Q |
154 |
ggaatcacttt |
164 |
Q |
| |
|
||||||||||| |
|
|
| T |
43357518 |
ggaatcacttt |
43357508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 43357410 - 43357365
Alignment:
| Q |
223 |
attgtgttgcaatcatgaaatgtttttcttatacctctcaagcttg |
268 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
43357410 |
attgtgttgcaatcttgaaatgttttccttattcctctcaaacttg |
43357365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University