View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_28 (Length: 301)
Name: NF3593_low_28
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 621180 - 620922
Alignment:
| Q |
2 |
tatttttaacatcagagatggactttagagacggattgtaccgtcacaaaattatcatgtctccaattccgtctcaaaccggtcaaatttcnnnnnnnaa |
101 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |
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| T |
621180 |
tatttttaacatcagagacagactttagagacggattgtaccgtcacaaaattattctgtctccaattccgtctcaaacaggtcaaatttctttttttaa |
621081 |
T |
|
| Q |
102 |
ttaattaaaaataactttttatttattcgttggggccatatctcattttcacaaggctccaaaatcgaatttcacttggctccaacccaaaaccccccaa |
201 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
621080 |
ttaattaaaaataactttttatccattcgctggggccatatctcattttcac-aggctccaaaatcgaatttcacttggctccaacccaaaa-cccccaa |
620983 |
T |
|
| Q |
202 |
ttttttcatccctcaacttcaaatttttgcaacgctttaaaataatcaaactcaaaattag |
262 |
Q |
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|||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||| |
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| T |
620982 |
ttttttcatccctcaacttcaaatttctgcaaagccttaaaataatcaaactaaaaattag |
620922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 35406623 - 35406881
Alignment:
| Q |
2 |
tatttttaacatcagagatggactttagagacggattgtaccgtcacaaaattatcatgtctccaattccgtctcaaaccggtcaaatttcnnnnnnnaa |
101 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |
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| T |
35406623 |
tatttttaacatcagagacggactttagagacggattgtaccgtcacaaaattattttgtctccaattccgtctcaaacaggtcaaatttctttttttaa |
35406722 |
T |
|
| Q |
102 |
ttaattaaaaataactttttatttattcgttggggccatatctcattttcacaaggctccaaaatcgaatttcacttggctccaacccaaaaccccccaa |
201 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
35406723 |
ttaattaaaaataactttttatccattcgctggggccatatctcattttcac-aggctccaaaatcgaatttcacttggctccaacccaaga-cccccaa |
35406820 |
T |
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| Q |
202 |
ttttttcatccctcaacttcaaatttttgcaacgctttaaaataatcaaactcaaaattag |
262 |
Q |
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|||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||| |
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| T |
35406821 |
ttttttcatccctcaacttcaaatttctgcaaagccttaaaataatcaaactaaaaattag |
35406881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 23952335 - 23952076
Alignment:
| Q |
1 |
ttatttttaacatcagagatggactttagagacggattgtaccgtcacaaaattatcatgtctccaattccgtctcaaaccggtcaaatttcnnnnnnna |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | |
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| T |
23952335 |
ttatttttaacatcagagacggactttagagacggattgtaccgtcacaaaattattctgtctccaattccgtctcaaacaggtcaaatttcttttttta |
23952236 |
T |
|
| Q |
101 |
attaattaaaaataactttttatttattcgttggggccatatctcattttcacaaggctccaaaatcgaatttcacttggctccaacccaaaacccccca |
200 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
23952235 |
attaattaaaaataactttttatccattcgttggagccatatctcattttca-aaggctccaaagtcgaattttacttggctccaacccaaaa-ccccca |
23952138 |
T |
|
| Q |
201 |
attttttcatccctcaacttcaaatttttgcaacgctttaaaataatcaaactcaaaattag |
262 |
Q |
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|||||||||||||| |||||||||||| ||||| || ||| ||||||||||||||||||||| |
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| T |
23952137 |
attttttcatcccttaacttcaaatttctgcaaagccttacaataatcaaactcaaaattag |
23952076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 34586033 - 34586313
Alignment:
| Q |
2 |
tatttttaacatcagagatggactttagagacggattgtaccgtcacaaaattatcatgtctccaattccgtctcaaaccggtcaaatttcnnnnnnnaa |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |
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| T |
34586033 |
tatttttaacatcagagacggactttagagacggattgtaccgtcacaaaattattctgtctccaattccgtctcaaacaggtcaaatttctttttttaa |
34586132 |
T |
|
| Q |
102 |
ttaattaaaaataactttttatttattcgttggggccatatctcattttcaca---------------------aggctccaaaatcgaatttcacttgg |
180 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34586133 |
ttaattaaaaataactttttatccattcgctggggccatatctcattttcacaggggccatatctcattttcacaggctccaaaatcgaatttcacttgg |
34586232 |
T |
|
| Q |
181 |
ctccaacccaaaaccccccaattttttcatccctcaacttcaaatttttgcaacgctttaaaataatcaaactcaaaattag |
262 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||| |
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| T |
34586233 |
ctccaacccaaaa-cccccaattttttcatccctcaacttcaaatttctgcaaagccttaaaataatcaaactaaaaattag |
34586313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11198244 - 11198049
Alignment:
| Q |
1 |
ttatttttaacatcagagatggactttagagacggattgtaccgtcacaaaattatcatgtctccaattccgtctcaaaccggtcaaatttcnnnnnnna |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| | |
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| T |
11198244 |
ttatttttaacatc-gagacagactttagagacggattgtaccgtcacaaaattattctgtctccaattccgtctcacacaggtcaaatttcttttttta |
11198146 |
T |
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| Q |
101 |
attaattaaaaataactttttatttattcgttggggccatatctcattttcacaaggctccaaaatcgaatttcacttggctccaacccaaaaccccc |
198 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11198145 |
attaattaaaaataactttttatccattcgctggggccatatctcattttcac-aggctccaaaatcgaatttcacttggctccaacccaaaaccccc |
11198049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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