View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_low_3 (Length: 542)

Name: NF3593_low_3
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_low_3
NF3593_low_3
[»] chr3 (15 HSPs)
chr3 (10-523)||(22123301-22123814)
chr3 (355-513)||(22613858-22614016)
chr3 (26-152)||(30988256-30988382)
chr3 (24-74)||(21938534-21938584)
chr3 (26-74)||(21931810-21931858)
chr3 (26-74)||(22029395-22029443)
chr3 (386-506)||(22184162-22184282)
chr3 (26-74)||(22188383-22188431)
chr3 (396-506)||(22007624-22007734)
chr3 (396-506)||(22015141-22015251)
chr3 (26-103)||(22116477-22116554)
chr3 (487-520)||(22619446-22619479)
chr3 (26-74)||(21947016-21947064)
chr3 (26-74)||(22035909-22035957)
chr3 (26-74)||(22180800-22180848)


Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 10 - 523
Target Start/End: Original strand, 22123301 - 22123814
Alignment:
Q  10 gcacagatgttcgagtgttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaaggacgagat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22123301 gcacagatgttcgagtgttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaaggacgagat 22123400  T
Q  110 tggaggtatgacatccttacaaacactatgttatgttgatttaaatatgaagggagtagtaaaactaattacagagctaggaaaactgaagcagttaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22123401 tggaggtatgacatccttacaaacactatgttatgttgatttaaatatgaagggagtagtaaaactaattacagagctaggaaaactgaagcagttaaag 22123500  T
Q  210 caattgggtttggttcaagttgggagagaaactgggatggctttattttcctcgttgaatgagttgcaaccattggagaagctaaatgttgaatcaaaat 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  22123501 caattgggtttggttcaagttgggagagaaactgggatgactttattttcctcgttgaatgagttgcaacaattggagaagctaaatattgaatcaaaat 22123600  T
Q  310 tgacaagtaatgacgaagtcattggtctgaatttgatttcacccgcaccaatggttcaaaatcttagactacatgcgaggttagagaagttgccagagtg 409  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22123601 tgacaagtaatgacgaagtcattggtttgaatttgatttcacccacaccaatggttcaaaatcttagactacatgcgaggttagagaagttgccagagtg 22123700  T
Q  410 gattcccaatcttcaaaatattgttcagttgaagttggcattctcccatttgaatgaagatccaatgaaatcaatacaaaatttgcaaaacttgttgtcc 509  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22123701 gattcccaagcttcaaaatattgttcagttgaagttggcattctcccatttgaatgaagatccaatgaaatcaatacaaaatttgcaaaacttgttgtcc 22123800  T
Q  510 ctctcaatcattgg 523  Q
    ||||| ||||||||    
T  22123801 ctctcgatcattgg 22123814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 513
Target Start/End: Complemental strand, 22614016 - 22613858
Alignment:
Q  355 caccaatggttcaaaatcttagactacatgcgaggttagagaagttgccagagtggattcccaatcttcaaaatattgttcagttgaagttggcattctc 454  Q
    |||||||| ||| | || |||||||  ||| || ||||||||||||||||||||||||||| || || |||||| ||||| |||| ||||||| || |||    
T  22614016 caccaatgcttcgagatattagactgtatgggaagttagagaagttgccagagtggattccaaagctacaaaatcttgttgagttaaagttggaatgctc 22613917  T
Q  455 ccatttgaatgaagatccaatgaaatcaatacaaaatttgcaaaacttgttgtccctct 513  Q
    ||| || |  || ||||||||| ||||| || || || ||||| |||||||||| ||||    
T  22613916 ccaattaacagatgatccaatggaatcactaaaacatatgcaacacttgttgtcactct 22613858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 30988382 - 30988256
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaaggacgagattggaggtatgacatcc 125  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||||||   | | | ||||||||||  || ||||| |  |||||||  |||||||||    
T  30988382 gttgccaaaggagattagcaagcttagaaagctaagacatcttatcggcactggactgtctttgattcagttaaaggatggtattggagagatgacatcc 30988283  T
Q  126 ttacaaacactatgttatgttgattta 152  Q
     ||||||| ||| |||||||| |||||    
T  30988282 ctacaaacgctacgttatgttaattta 30988256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 21938534 - 21938584
Alignment:
Q  24 gtgttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||||| ||| |||||||||| | ||||||||||||||||||||||    
T  21938534 gtgttgccaaaagagattagcaagctcagaaagctaagacatcttatcggc 21938584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 21931810 - 21931858
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  21931810 gttgccaaaggagattaggaagcttagaaagctaagacatcttatcggc 21931858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22029395 - 22029443
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  22029395 gttgccaaaggagattaggaagcttagaaagctaagacatcttatcggc 22029443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 506
Target Start/End: Original strand, 22184162 - 22184282
Alignment:
Q  386 gaggttagagaagttgccagagtggattcccaatcttcaaaatattgttcagttgaagttggcattctcccatttgaatgaagatccaatgaaatcaata 485  Q
    ||||||| | ||||||||| |||||| ||| || ||||||||| ||||| |||||  ||||  |  ||||||||| | | ||||||||||| ||||| ||    
T  22184162 gaggttacaaaagttgccaaagtggactccaaagcttcaaaatcttgttgagttgtggttgataaactcccatttaactaaagatccaatgcaatcacta 22184261  T
Q  486 caaaatttgcaaaacttgttg 506  Q
     ||| ||||||| ||||||||    
T  22184262 aaaagtttgcaatacttgttg 22184282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22188383 - 22188431
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  22188383 gttgccaaaggagattaggaagcttagaaagctaagacatcttatcggc 22188431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 506
Target Start/End: Original strand, 22007624 - 22007734
Alignment:
Q  396 aagttgccagagtggattcccaatcttcaaaatattgttcagttgaagttggcattctcccatttgaatgaagatccaatgaaatcaatacaaaatttgc 495  Q
    ||||||||| |||||| ||| || ||||||||| ||||| |||||  ||||  |  ||||||||| | | ||||||||||| ||||| || ||| |||||    
T  22007624 aagttgccaaagtggactccaaagcttcaaaatcttgttgagttgtggttgataaactcccatttaactaaagatccaatgcaatcactaaaaagtttgc 22007723  T
Q  496 aaaacttgttg 506  Q
    || ||||||||    
T  22007724 aatacttgttg 22007734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 506
Target Start/End: Original strand, 22015141 - 22015251
Alignment:
Q  396 aagttgccagagtggattcccaatcttcaaaatattgttcagttgaagttggcattctcccatttgaatgaagatccaatgaaatcaatacaaaatttgc 495  Q
    ||||||||| |||||| ||| || ||||||||| ||||| |||||  ||||  |  ||||||||| | | ||||||||||| ||||| || ||| |||||    
T  22015141 aagttgccaaagtggactccaaagcttcaaaatcttgttgagttgtggttgataaactcccatttaactaaagatccaatgcaatcactaaaaagtttgc 22015240  T
Q  496 aaaacttgttg 506  Q
    || ||||||||    
T  22015241 aatacttgttg 22015251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 22116477 - 22116554
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaagga 103  Q
    ||||||||| ||| |||||||||||| ||||||||| || |||||||||  |  | |||||||||||| ||| |||||    
T  22116477 gttgccaaaggagattagcaagcttagaaagctaaggcaccttatcggccaccgactatctttgattcaattaaagga 22116554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 520
Target Start/End: Complemental strand, 22619479 - 22619446
Alignment:
Q  487 aaaatttgcaaaacttgttgtccctctcaatcat 520  Q
    ||||| ||||||||||||||||||||||||||||    
T  22619479 aaaatctgcaaaacttgttgtccctctcaatcat 22619446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 21947016 - 21947064
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||| ||| | |||||||||| |||| |||||||||||||||||    
T  21947016 gttgccaaaggagataagcaagcttataaagttaagacatcttatcggc 21947064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22035909 - 22035957
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||| ||| |||||||||||| ||||||||| || |||||||||    
T  22035909 gttgccaaaggagattagcaagcttagaaagctaaggcaccttatcggc 22035957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22180800 - 22180848
Alignment:
Q  26 gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc 74  Q
    ||||||||| ||| | |||||||||| |||||||| |||||||||||||    
T  22180800 gttgccaaaggagataagcaagcttagaaagctaaaacatcttatcggc 22180848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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