View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_35 (Length: 249)
Name: NF3593_low_35
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_35 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 137336 - 137106
Alignment:
| Q |
19 |
aggatctctacaaagcgttgcatgccttttgttggttcattggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaatgttggtgatt |
118 |
Q |
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||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
137336 |
aggatctatacaaagcgctgcatgccttttgttggttcgttggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaatgttggtgatt |
137237 |
T |
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| Q |
119 |
aaatcatcactcagataatccattgttgaaaaaaggaaaaggatgttttgttgttgaagtttttctttttgaacaaagggttgaggaaaataagaaaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
137236 |
aaatcatcactcagataatccattgttgaaaaaaggaaaaggatgttttgttgttgaagtttttctttttgaacaaagggttgaggaaaataagaaaaga |
137137 |
T |
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| Q |
219 |
tggtagaacttgcaagagaaggtgaaatatt |
249 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
137136 |
tggtagaacttgcaagagaaggtgaagtatt |
137106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 23925452 - 23925587
Alignment:
| Q |
19 |
aggatctctacaaagcgttgcatgccttttgttggttcattggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaatgttggtgatt |
118 |
Q |
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|||||| |||||||||| |||| |||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
23925452 |
aggatccctacaaagcgctgcaaaccttttgttggttctttgaaagtaaaaaaggtcatacatgctatgagcaacaactctcgcagcaatgttaatgatt |
23925551 |
T |
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| Q |
119 |
aaatcatcactcagataatccattgttgaaaaaagga |
155 |
Q |
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| T |
23925552 |
aaatcatcacttaga-aatccattgttaagaaaagga |
23925587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 23925620 - 23925697
Alignment:
| Q |
173 |
tgaagtttttcttttt-gaacaaagggttgaggaaaataagaaaagatggtagaacttgcaagagaaggtgaaatatt |
249 |
Q |
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|||||||||||||||| |||||||| |||| |||||| ||| |||||| ||||||||||||||||||||||| |||| |
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| T |
23925620 |
tgaagtttttctttttagaacaaagagttggagaaaatgagagaagatgatagaacttgcaagagaaggtgaagtatt |
23925697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 23808840 - 23808705
Alignment:
| Q |
20 |
ggatctctacaaagcgttgcatgccttttgttggttcattggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaatgttggtgatta |
119 |
Q |
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| T |
23808840 |
ggatccctacaaagtgctgtatgtcttctgttggttctttggaaccagaaaaggtcatacatgctatgagcagcaactctcgcagcaatgttgatgatta |
23808741 |
T |
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| Q |
120 |
aatcatcactcagata-atccattgttgaaaaaagga |
155 |
Q |
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| T |
23808740 |
aatcatcactca-atatatccaatcttgaaaaaagga |
23808705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 20598707 - 20598597
Alignment:
| Q |
32 |
agcgttgcatgccttttgttggttcattggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaatgttggtgattaaatcatcactca |
131 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||||| || ||| |||| | ||||||||| | |
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| T |
20598707 |
agcgctgcatgccttttgttggttcgttggaagtagaaaaggtcgtatatgctatgagcagcaactcttgcagcgattttgatgatcagatcatcactta |
20598608 |
T |
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| Q |
132 |
gataatccatt |
142 |
Q |
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| T |
20598607 |
gaaaatccatt |
20598597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 122808 - 122858
Alignment:
| Q |
58 |
ttggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaat |
108 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
122808 |
ttggaagtagaaaaggtcatacatgctatgaccagcgactcttgcagcaat |
122858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 114888 - 114938
Alignment:
| Q |
58 |
ttggaagtagaaaaggtcatacatgctatgagcagcaactctcgcagcaat |
108 |
Q |
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||||||||| ||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
114888 |
ttggaagtaaaaaaggtcatacatgctatgaccagcgactcttgcagcaat |
114938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 14158847 - 14158790
Alignment:
| Q |
74 |
tcatacatgctatgagcagcaactctcgcagcaatgttggtgattaaatcatcactca |
131 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
14158847 |
tcatgcatgctatcagcagcaactctctcagcaatgttgaggatttaatcatcactca |
14158790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 4338 - 4426
Alignment:
| Q |
71 |
aggtcatacatgctatgagcagcaactctcgcagcaatgttggtgattaaatcatcactcagataatccattgttgaaaaaaggaaaag |
159 |
Q |
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||||| ||||||||| ||| || || ||| ||||||||||| | || || |||||||||| ||||||||| ||| |||||||||||| |
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| T |
4338 |
aggtcgtacatgctacgagaggccaccctcacagcaatgttgataatcaagtcatcactcaaataatccatggtttgaaaaaggaaaag |
4426 |
T |
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