View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_36 (Length: 249)
Name: NF3593_low_36
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8110296 - 8110056
Alignment:
| Q |
1 |
gtgagtactcactcctttaaatgttttgtagcttatagagttgaaacttttaatctaagtcatagaaaaagctatatgtttcatctttttgtttcaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8110296 |
gtgagtactcactcctttaaatgttttgtagcttatagagttgaaacttttaatctaagtcatagaaaaagctatatgtttcatccttttgtttcaaaga |
8110197 |
T |
|
| Q |
101 |
gtctagcacgagactctcg--cacgcactaagtgcaaagaccgtaaatattgcaagttcgaaccattatcttatagtatcaaatgtctctacaatctttt |
198 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8110196 |
gtctagcacgagactctcgcacacgcactaagtgcaaagaccgt-aatattgcaagttctaaccattatcttatagtatcaaatgtctctacaatctttt |
8110098 |
T |
|
| Q |
199 |
atcatcctagcacgacgcggggcatacaattgtaagcctttg |
240 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||| |
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| T |
8110097 |
atcatcctagcacaacacggggcatacaattgtaagcctttg |
8110056 |
T |
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