View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_37 (Length: 247)
Name: NF3593_low_37
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 40107173 - 40107403
Alignment:
| Q |
17 |
aataatgacttaagtagtctgttgtcctttttagtccaggggagtacttgctactgtgaaattgtactaacaataatgctaatttgttgtcctcctgttt |
116 |
Q |
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| T |
40107173 |
aataatgacttaagtagtctgttgtcctttttagtccaggggagtacttgctactgtgaaattgtactaacaataatgctaatttgttgtcctcctgttt |
40107272 |
T |
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| Q |
117 |
ggatatacatcgtcaaatagaaatggatctttacaattgtccatttaattgcaccggtttttggcacatttccataaataagaccatctactgaatcccc |
216 |
Q |
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| T |
40107273 |
ggatatacatcgtcaaatagaaatggatctttacaattgtccatttaattgcaccggtttttggcacatttccataaataagaccatctactgaatcccc |
40107372 |
T |
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| Q |
217 |
gatgaacatgtgcactgtaatgttatatgtc |
247 |
Q |
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| T |
40107373 |
gatgaacatgtgcactgtaatgttatatgtc |
40107403 |
T |
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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 12199169 - 12199102
Alignment:
| Q |
120 |
tatacatcgtcaaatagaaatggatctttacaattgtccatttaattgcaccggtttttggcacattt |
187 |
Q |
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| T |
12199169 |
tatacatcatcaaatagaaatggatgtttacaattgtccatttaattgcaccagtttttggcacattt |
12199102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 12199083 - 12199034
Alignment:
| Q |
190 |
ataaataagaccatctactgaatccccgatgaacatgtgcactgtaatgt |
239 |
Q |
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| T |
12199083 |
ataaataagactatctactgaatccccaatggacatgggcactgtaatgt |
12199034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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