View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3593_low_4 (Length: 536)
Name: NF3593_low_4
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_4 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Original strand, 23471789 - 23472297
Alignment:
| Q |
9 |
gagatgaacaaccatcgagtttaaggtttcggagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaat |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23471789 |
gagatgaacaaccatcaagtttaaggtttcggagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaat |
23471888 |
T |
|
| Q |
109 |
aagtcgagggatagaaaagatggatggatggagatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttggg |
208 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23471889 |
aagtcgagggagagaaaagatgtatggatggagatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttggg |
23471988 |
T |
|
| Q |
209 |
atctcaatcagatctttggagtaattaaggctaaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23471989 |
atctcaatcagatctttggagtaattaaggctaaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaa |
23472088 |
T |
|
| Q |
309 |
acaaaacctagttaagaataaacagaagcatgccatactaactctgctgcatttttgtgaatgacattagacttcctcttgtacctctataaagttaaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23472089 |
acaaaacctagttaagaataaacagaagcatgccatactaactctgctgcatttttgtgaatgacattagacttcctcttgtacctctataaagttaaca |
23472188 |
T |
|
| Q |
409 |
agtacatccaaacatatttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttg |
508 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23472189 |
agtacatccaaacat-tttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttg |
23472287 |
T |
|
| Q |
509 |
atggaaaaga |
518 |
Q |
| |
|
|||||||||| |
|
|
| T |
23472288 |
atggaaaaga |
23472297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 41 - 518
Target Start/End: Original strand, 23439285 - 23439762
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggatagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || | |||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
23439285 |
agagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaatgtaagtcgagggagagaaaagatggatggatgga |
23439384 |
T |
|
| Q |
141 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
240 |
Q |
| |
|
| ||||||| ||||||||||| | ||||| | || || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23439385 |
gctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcggggatctcaatcagatctttggagtaattaaggca |
23439484 |
T |
|
| Q |
241 |
aaatgtgattagattc-acaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctagttaagaataaacagaagcat |
339 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
23439485 |
gattgtgattagattttacaagattctgtaacaagaaataaacatgcataagtgttgattaaaagagaaacaaaacctagttaagaataaatagaggcat |
23439584 |
T |
|
| Q |
340 |
gccatactaactctgctgcatttttgtgaatgacattagacttcctcttgtacctctataaagttaacaagtacatccaaacatatttgtacctgaactc |
439 |
Q |
| |
|
| ||| ||| ||||||| || |||||||||| || ||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23439585 |
gtcatcctagctctgctacaattttgtgaatagcacgagact-cctcttgtacctttataaagttaacaagtatatccaaacatatttgtacctgaactc |
23439683 |
T |
|
| Q |
440 |
catcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23439684 |
catctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
23439762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 23351351 - 23351661
Alignment:
| Q |
9 |
gagatgaacaaccatcgagtttaaggtttcggagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaat |
108 |
Q |
| |
|
|||||||||| ||| |||||||||| || | ||||| ||||||||||| ||||||||||||||||| |||||||||||| || |||||||||| | || |
|
|
| T |
23351351 |
gagatgaacagccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatat |
23351450 |
T |
|
| Q |
109 |
aagtcgagggatagaaaagatggatggatggagatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttggg |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
23351451 |
aagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctggg |
23351550 |
T |
|
| Q |
209 |
atctcaatcagatctttggagtaattaaggctaaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaa |
308 |
Q |
| |
|
||||||||||||||||||||| | | ||| ||| || |||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
23351551 |
atctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataagaaataaacatgcatgagttttgattaaaagagaa |
23351650 |
T |
|
| Q |
309 |
acaaaacctag |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
23351651 |
acaaaacctag |
23351661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 40 - 323
Target Start/End: Original strand, 23385720 - 23386003
Alignment:
| Q |
40 |
gagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggatagaaaagatggatggatgg |
139 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
23385720 |
gagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatatataattcgagggagagaaaagatggatggatgg |
23385819 |
T |
|
| Q |
140 |
agatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggc |
239 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||| | | ||||||||| ||||||||||||||| ||||||||||||||||||||||||| | | ||| | |
|
|
| T |
23385820 |
agctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctgggatctcaatcagatctttggaggattcaagcc |
23385919 |
T |
|
| Q |
240 |
taaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctagttaa |
323 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23385920 |
aaagtactcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaaacaaaacctagttaa |
23386003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 41 - 323
Target Start/End: Original strand, 23404092 - 23404374
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaat-aagtcgagggatagaaaagatggatggatgg |
139 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || |||||||||||| ||| ||||| | | | |||| |||||| ||||||||||||||||||| |
|
|
| T |
23404092 |
agagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctag-atattgaagttgagggagagaaaagatggatggatgg |
23404190 |
T |
|
| Q |
140 |
agatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggc |
239 |
Q |
| |
|
|| ||||||| ||||||||||| ||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||| | |
|
|
| T |
23404191 |
agttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctgggatctcaatcagatctttggaggattcaagcc |
23404290 |
T |
|
| Q |
240 |
taaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctagttaa |
323 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23404291 |
aaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaaacaaaacctagttaa |
23404374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 41 - 323
Target Start/End: Original strand, 23462711 - 23462993
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaat-aagtcgagggatagaaaagatggatggatgg |
139 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || |||||||||||| ||| ||||| | | | |||| |||||| ||||||||||||||||||| |
|
|
| T |
23462711 |
agagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctag-atattgaagttgagggagagaaaagatggatggatgg |
23462809 |
T |
|
| Q |
140 |
agatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggc |
239 |
Q |
| |
|
|| ||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| | |
|
|
| T |
23462810 |
agttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctgggatctcaatcagatctttggaggatcgaagcc |
23462909 |
T |
|
| Q |
240 |
taaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctagttaa |
323 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23462910 |
aaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaaacaaaacctagttaa |
23462993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 41 - 281
Target Start/End: Original strand, 23477986 - 23478226
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggatagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||| ||||||||| || | ||||| |
|
|
| T |
23477986 |
agagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatcagggagagaaaagatagaagaatgga |
23478085 |
T |
|
| Q |
141 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
240 |
Q |
| |
|
| |||| |||||||||||||| | | |||| |||| | | ||||||||||||| ||||||||| ||||||||||||||||| ||||||| | | ||| | |
|
|
| T |
23478086 |
gctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctcaatcagatttttggaggattcaagcca |
23478185 |
T |
|
| Q |
241 |
aaatgtgattagattcacaagattctgtaacaagaaataaa |
281 |
Q |
| |
|
|| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23478186 |
aagtatgtttagattcacaagattctgtaacaagaaataaa |
23478226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 41 - 281
Target Start/End: Original strand, 23498435 - 23498675
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggatagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||| ||||||||| || | ||||| |
|
|
| T |
23498435 |
agagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatcagggagagaaaagatcgaagaatgga |
23498534 |
T |
|
| Q |
141 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
240 |
Q |
| |
|
| |||| |||||||||||||| | | |||| |||| | | ||||||||||||| ||||||||| ||||||||||||||||| ||||||| | | ||| | |
|
|
| T |
23498535 |
gctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctcaatcagatttttggaggattcaagcca |
23498634 |
T |
|
| Q |
241 |
aaatgtgattagattcacaagattctgtaacaagaaataaa |
281 |
Q |
| |
|
|| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23498635 |
aagtatgtttagattcacaagattctgtaacaagaaataaa |
23498675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 41 - 281
Target Start/End: Original strand, 23446686 - 23446926
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggatagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| ||||| |||||||||||| ||||||| |
|
|
| T |
23446686 |
agagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatatctaagatcagggagagaaaagatggaaggatgga |
23446785 |
T |
|
| Q |
141 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
240 |
Q |
| |
|
| |||| |||||||||||||| | | |||| |||| | | ||||||||||||| ||||||||| ||||||||||||||||| ||||||| | | ||| | |
|
|
| T |
23446786 |
gctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctcaatcagatttttggaggattcaagcca |
23446885 |
T |
|
| Q |
241 |
aaatgtgattagattcacaagattctgtaacaagaaataaa |
281 |
Q |
| |
|
|| | || |||||||||||||||||||||| |||||||||| |
|
|
| T |
23446886 |
aagtatgtttagattcacaagattctgtaaaaagaaataaa |
23446926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 373 - 512
Target Start/End: Original strand, 23446998 - 23447136
Alignment:
| Q |
373 |
cattagacttcctcttgtacctctataaagttaacaagtacatccaaacatatttgtacctgaactccatcccagagctttttaagcttgctatgagtca |
472 |
Q |
| |
|
||||||||||||||| ||| || | ||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
23446998 |
cattagacttcctctcatacttcaacaaa-ttaacaagtatatccaaacacatttgtacctgaactccatcccatagctttttaagcttgctatgactca |
23447096 |
T |
|
| Q |
473 |
tgtgaagctctacaagcatttcagcacaaaagtttgatgg |
512 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23447097 |
agtgaagctctatgagcatttcagcacaaaaggttgatgg |
23447136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 373 - 512
Target Start/End: Original strand, 23478298 - 23478436
Alignment:
| Q |
373 |
cattagacttcctcttgtacctctataaagttaacaagtacatccaaacatatttgtacctgaactccatcccagagctttttaagcttgctatgagtca |
472 |
Q |
| |
|
||||||||||||||| ||| || | ||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
23478298 |
cattagacttcctctcatacttcaaaaaa-ttaacaagtatatccaaacacatttgtacctgaactccatcccatagctttttaagcttgctatgactca |
23478396 |
T |
|
| Q |
473 |
tgtgaagctctacaagcatttcagcacaaaagtttgatgg |
512 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23478397 |
agtgaagctctatgagcatttcagcacaaaaggttgatgg |
23478436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 373 - 512
Target Start/End: Original strand, 23498777 - 23498915
Alignment:
| Q |
373 |
cattagacttcctcttgtacctctataaagttaacaagtacatccaaacatatttgtacctgaactccatcccagagctttttaagcttgctatgagtca |
472 |
Q |
| |
|
||||||||||||||| ||| || | ||| |||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
23498777 |
cattagacttcctctcatacttcgacaaa-ttaacaagtatatccaaacagaattgtacctgaactccatcccatagctttttaagcttgctatgactca |
23498875 |
T |
|
| Q |
473 |
tgtgaagctctacaagcatttcagcacaaaagtttgatgg |
512 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23498876 |
agtgaagctctatgagcatttcagcacaaaaggttgatgg |
23498915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 23351699 - 23351791
Alignment:
| Q |
426 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
23351699 |
ttgtacctgaactccatcccagagctttttaagcttgcaatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaaga |
23351791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 23453808 - 23453912
Alignment:
| Q |
414 |
atccaaacatatttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatgga |
513 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
23453808 |
atccaaacacatttgtacctgaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcatttcagcacaaaaggttggtggc |
23453907 |
T |
|
| Q |
514 |
aaaga |
518 |
Q |
| |
|
||||| |
|
|
| T |
23453908 |
aaaga |
23453912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 23386037 - 23386131
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
23386037 |
atttgtacctgaactccatcccagagctttttaagcttgctttgattcatgcaaagctctacaagcatttcagcacaaaaggttgatggcaaaga |
23386131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 41 - 285
Target Start/End: Original strand, 23453462 - 23453702
Alignment:
| Q |
41 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggatagaaaagatggatggatgga |
140 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||| | | |||||||| ||||||| |
|
|
| T |
23453462 |
agagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatcagggagacagaagatggaaggatgga |
23453561 |
T |
|
| Q |
141 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
240 |
Q |
| |
|
| |||| |||||||||||||| || | ||| | |||||||||| || ||||||||| ||||||||||||||||||||||||| | | ||| | |
|
|
| T |
23453562 |
gctgacacaggctttcacatt----gaaaaacactccatgaagatttgtatccttagataagtctgggatctcaatcagatctttggaggattcaagccg |
23453657 |
T |
|
| Q |
241 |
aaatgtgattagattcacaagattctgtaacaagaaataaacatg |
285 |
Q |
| |
|
| | || ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23453658 |
gagtatgtttagattcacaagattctgtaacaataaataaacatg |
23453702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 23404408 - 23404502
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
23404408 |
atttgtacctgaactccatcccagagctttttaagcttgctttgagccatgcaaagctctacaagcatttcagcacaaaaagttgatggcaaaga |
23404502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 23463039 - 23463133
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
23463039 |
atttgtacctgaactccatcccagagctttttaagcttgctatgactcatgcaaagatatacaagcatttcagcacaaaaggttgatggcaaaga |
23463133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 36002285 - 36002379
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| ||||||| |||||| ||| | |||||| |||||||||| ||| ||| ||| ||||| |
|
|
| T |
36002285 |
atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga |
36002379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 519
Target Start/End: Original strand, 23468335 - 23468392
Alignment:
| Q |
462 |
gctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaagat |
519 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
23468335 |
gctatgactcatgcaaatctctacaagcatttcagcacaaaaggttgatggcaaagat |
23468392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 35769830 - 35769769
Alignment:
| Q |
429 |
tacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagca |
490 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||| ||||||| || |||| |||||||||||||| |
|
|
| T |
35769830 |
tacctgaactccgtcccaaagcttttgaaggttgctataaggcatgcaaagctctacaagca |
35769769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 36023390 - 36023431
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgcta |
465 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
36023390 |
atttgtacctgaattccatcccaaagcttttttagcttgcta |
36023431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 23351662 - 23351706
Alignment:
| Q |
350 |
ctctgctgcatttttgtgaatgacattagacttcctcttgtacct |
394 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
23351662 |
ctctactgcaattttgtgaatagcattagacttcctcttgtacct |
23351706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 10824 - 11125
Alignment:
| Q |
9 |
gagatgaacaaccatcgagtttaaggtttcggagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaat |
108 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||| ||||||||||| | || |||||||||||| || ||||||||||||| ||||||||| | ||| |
|
|
| T |
10824 |
gagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctag-ataat |
10922 |
T |
|
| Q |
109 |
-aagtcgagggatagaaaagatggatggatggagatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgg |
207 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| ||||||||||||| ||||| | ||||| || ||| ||||||||||||||| ||||||| || |
|
|
| T |
10923 |
caagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctga |
11022 |
T |
|
| Q |
208 |
gatctcaatcagatctttggagtaattaag-gctaaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagag |
306 |
Q |
| |
|
|| |||||| |||||||| |||| ||| | | | || ||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
11023 |
gagctcaatgagatctttagagtttggaagcgaaagaactg-ttagattcacaagatcctgtaacaagaaataaacaagcatgagtgttgattaaaagag |
11121 |
T |
|
| Q |
307 |
aaac |
310 |
Q |
| |
|
|||| |
|
|
| T |
11122 |
aaac |
11125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 393 - 518
Target Start/End: Original strand, 11169 - 11294
Alignment:
| Q |
393 |
ctctataaagttaacaagtacatccaaacatatttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatt |
492 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
11169 |
ctctataaagttaacaagtatatccaaacatatttttacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcatt |
11268 |
T |
|
| Q |
493 |
tcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
| |||| ||||| ||||||| ||||| |
|
|
| T |
11269 |
ttagcagaaaaggttgatggcaaaga |
11294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 16121424 - 16121518
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga |
518 |
Q |
| |
|
||||||||||||| || |||||| |||||| ||||||||||||| |||||| ||| ||||||||| ||| || ||||||| ||||||| ||||| |
|
|
| T |
16121424 |
atttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttctacaagcttttgaggacaaaaggttgatggcaaaga |
16121518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 519
Target Start/End: Complemental strand, 16337744 - 16337649
Alignment:
| Q |
424 |
atttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaagat |
519 |
Q |
| |
|
||||||||||||| || |||||| |||||| ||||||||||||| |||||| ||| | |||||| ||| |||||||||| ||||||| |||||| |
|
|
| T |
16337744 |
atttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttgtacaaggttttgagcacaaaaggttgatggcaaagat |
16337649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 12897608 - 12897553
Alignment:
| Q |
36 |
ttcggagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacct |
91 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| |||||||| |||||| |||||||| |
|
|
| T |
12897608 |
ttcggagagattttgaatgaatgttagttttcaggctttcaatctttttgcaacct |
12897553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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