View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_low_43 (Length: 230)

Name: NF3593_low_43
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_low_43
NF3593_low_43
[»] chr1 (6 HSPs)
chr1 (1-230)||(41430795-41431024)
chr1 (1-92)||(41425526-41425617)
chr1 (25-93)||(41440992-41441060)
chr1 (148-189)||(41440899-41440940)
chr1 (50-95)||(41452274-41452319)
chr1 (157-189)||(41452173-41452205)
[»] scaffold0274 (2 HSPs)
scaffold0274 (1-230)||(13899-14128)
scaffold0274 (1-95)||(18352-18446)
[»] chr2 (3 HSPs)
chr2 (1-144)||(33362111-33362253)
chr2 (1-94)||(33369185-33369278)
chr2 (150-189)||(33369079-33369118)
[»] chr7 (1 HSPs)
chr7 (42-141)||(7764085-7764183)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41431024 - 41430795
Alignment:
Q  1 tcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataaga 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41431024 tcatcatcattgtcgccgtcatcaatgtcaatcacatcatggacaatggactacaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataaga 41430925  T
Q  101 atttcagaaacaactataaaacagagataaaataaaatggaactcacagccccttatttctaaaggtaccagtagcttcataacaacaaggaaacctcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41430924 atttcagaaacaactataaaacagagataaaataaaatggaacttatagccccttattactaaaggtaccagtagcttcataacaacaaggaaacctcca 41430825  T
Q  201 agttcaatcccctctacttcgaaaaccaaa 230  Q
    ||||||||||||||||||||||||||||||    
T  41430824 agttcaatcccctctacttcgaaaaccaaa 41430795  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 41425617 - 41425526
Alignment:
Q  1 tcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaa 92  Q
    ||||||||||||||||||   | |||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  41425617 tcatcatcattgtcgccgctgttaatgtcaatcacatcatggacaatggactacaaaagtaacaaataatgatcatttgtttgtaaagaaaa 41425526  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 41441060 - 41440992
Alignment:
Q  25 atgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaa 93  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  41441060 atgtcaatcacatcatggacaatggactacagaagtaacaaacaatgattatttgttggtacagaaaaa 41440992  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 41440940 - 41440899
Alignment:
Q  148 agccccttatttctaaaggtaccagtagcttcataacaacaa 189  Q
    |||||||  |||||||||||| ||||||||||||||||||||    
T  41440940 agcccctagtttctaaaggtatcagtagcttcataacaacaa 41440899  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 41452319 - 41452274
Alignment:
Q  50 actacaagagtaacaaacaatgattatttgtttgtaaagaaaaaga 95  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||    
T  41452319 actacaaaagtaacaaacaatgattatttgttggtaagaaaaaaga 41452274  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 41452205 - 41452173
Alignment:
Q  157 tttctaaaggtaccagtagcttcataacaacaa 189  Q
    |||||||||||||| ||||||||||||||||||    
T  41452205 tttctaaaggtaccggtagcttcataacaacaa 41452173  T

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Target: scaffold0274 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13899 - 14128
Alignment:
Q  1 tcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataaga 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  13899 tcatcatcattgtcgccgtcatcaatgtcaatcacatcatggacaatggactgcaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataaga 13998  T
Q  101 atttcagaaacaactataaaacagagataaaataaaatggaactcacagccccttatttctaaaggtaccagtagcttcataacaacaaggaaacctcca 200  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13999 atttcagaaacaactataaaacagagttaaaataaaatgaaacttacagccccttatttctaaaggtaccagtagcttcataacaacaaggaaacctcca 14098  T
Q  201 agttcaatcccctctacttcgaaaaccaaa 230  Q
    ||||||||||||||||||||||||||||||    
T  14099 agttcaatcccctctacttcgaaaaccaaa 14128  T

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Target: scaffold0274; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18352 - 18446
Alignment:
Q  1 tcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaaga 95  Q
    ||||||||||||||||||   | |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18352 tcatcatcattgtcgccgctgttaatgtcaatcacatcatggacaatggactacaaaagtaacaaataatgattatttgtttgtaaagaaaaaga 18446  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33362253 - 33362111
Alignment:
Q  1 tcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataaga 100  Q
    ||||||||||||||| |||| || ||||||||  ||||||||||||||| |||||| || ||||||||| ||||||||||| ||||||||||| || |||    
T  33362253 tcatcatcattgtcgtcgtcgtcgatgtcaattacatcatggacaatgggctacaacagaaacaaacaaagattatttgttggtaaagaaaaacat-aga 33362155  T
Q  101 atttcagaaacaactataaaacagagataaaataaaatggaact 144  Q
     ||||| ||| |  | ||||||| ||||||||||||||||||||    
T  33362154 ctttcaaaaatatttttaaaacatagataaaataaaatggaact 33362111  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33369278 - 33369185
Alignment:
Q  1 tcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaag 94  Q
    ||||||||||  || || ||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  33369278 tcatcatcatcctcaccatcatcaatgtcaatcacatcaaggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaag 33369185  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 33369118 - 33369079
Alignment:
Q  150 ccccttatttctaaaggtaccagtagcttcataacaacaa 189  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33369118 ccccttatttctaaaggtaccaatagcttcataacaacaa 33369079  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 7764085 - 7764183
Alignment:
Q  42 gacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgga 141  Q
    ||||| ||||||||| |||||||||||| ||||| ||||| |||||||||||||  ||| ||| ||||||   ||||||||| |||||||||||||||||    
T  7764085 gacaacggactacaaaagtaacaaacaacgattacttgttggtaaagaaaaaga-cagacttttagaaacgtttataaaacatagataaaataaaatgga 7764183  T

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