View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_low_45 (Length: 227)

Name: NF3593_low_45
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_low_45
NF3593_low_45
[»] chr4 (10 HSPs)
chr4 (48-226)||(4222012-4222190)
chr4 (48-218)||(3823429-3823602)
chr4 (105-149)||(5648308-5648352)
chr4 (105-149)||(9832354-9832398)
chr4 (105-149)||(20225032-20225076)
chr4 (105-149)||(29207939-29207983)
chr4 (105-149)||(30690217-30690261)
chr4 (105-149)||(47444007-47444051)
chr4 (105-149)||(47528571-47528615)
chr4 (105-149)||(48598866-48598910)
[»] chr8 (6 HSPs)
chr8 (105-149)||(8897805-8897849)
chr8 (100-149)||(45071314-45071363)
chr8 (105-149)||(12670291-12670335)
chr8 (105-149)||(13160751-13160795)
chr8 (105-149)||(29877144-29877188)
chr8 (105-149)||(36720846-36720890)
[»] chr5 (5 HSPs)
chr5 (105-149)||(7368446-7368490)
chr5 (105-149)||(8170025-8170069)
chr5 (105-149)||(24448940-24448984)
chr5 (105-149)||(32703472-32703516)
chr5 (105-149)||(34154855-34154899)
[»] chr3 (10 HSPs)
chr3 (103-145)||(25517209-25517251)
chr3 (100-149)||(22609837-22609886)
chr3 (105-149)||(15797292-15797336)
chr3 (105-149)||(16735512-16735556)
chr3 (105-149)||(22122958-22123002)
chr3 (105-149)||(26573199-26573243)
chr3 (105-149)||(34771405-34771449)
chr3 (105-149)||(40272853-40272897)
chr3 (105-149)||(47624113-47624157)
chr3 (105-149)||(54484763-54484807)
[»] scaffold0180 (1 HSPs)
scaffold0180 (105-149)||(24174-24218)
[»] scaffold0015 (1 HSPs)
scaffold0015 (105-149)||(48675-48719)
[»] chr7 (7 HSPs)
chr7 (105-149)||(7879688-7879732)
chr7 (105-149)||(10693114-10693158)
chr7 (109-149)||(18747537-18747577)
chr7 (105-149)||(19265864-19265908)
chr7 (105-149)||(21172050-21172094)
chr7 (105-149)||(42391141-42391185)
chr7 (105-149)||(48735163-48735207)
[»] chr6 (2 HSPs)
chr6 (105-149)||(1347012-1347056)
chr6 (105-149)||(1354798-1354842)
[»] chr2 (9 HSPs)
chr2 (105-149)||(8455357-8455401)
chr2 (105-149)||(9671229-9671273)
chr2 (105-149)||(10546213-10546257)
chr2 (105-149)||(22371104-22371148)
chr2 (105-149)||(23145739-23145783)
chr2 (105-149)||(23397814-23397858)
chr2 (105-149)||(23557529-23557573)
chr2 (105-149)||(24890461-24890505)
chr2 (105-149)||(36871542-36871586)
[»] chr1 (3 HSPs)
chr1 (105-149)||(4349711-4349755)
chr1 (105-149)||(34725139-34725183)
chr1 (105-149)||(35253228-35253272)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 4222012 - 4222190
Alignment:
Q  48 ccagtaaaccatttcatcttagaaaagggcaatccggtgcactaaaacttcacaagatccgggaaggggtcccaccaatttgtgtattctacgtagcctt 147  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  4222012 ccagtaaaccatttcttcttagaaaagggcaatccggtgtactaaaacttcacaagattcgggaaggggtcccaccaatttgtgtattctacgcagcctt 4222111  T
Q  148 actttgnnnnnnnacaaaagaggttgttctaaggaatttgtgacctttcaataacgtgacaacaactttacaaaagagg 226  Q
    ||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4222112 actttgtttttttacaaaagaggttgttttaaggaatttgtgacctttcaataacgtgacaacaactttacaaaagagg 4222190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 3823429 - 3823602
Alignment:
Q  48 ccagtaaaccatttcatcttagaaaagggcaatcc--ggtgcactaaaacttcacaagatccgggaaggggtcccaccaatttgtgtattctacgtagcc 145  Q
    ||||||||||||||| ||||||||||| |||  ||  |||||||||||||| ||||||||||||||||||||| |||||| |  | ||||||||| ||||    
T  3823429 ccagtaaaccatttcttcttagaaaagagcagcccccggtgcactaaaactccacaagatccgggaaggggtcgcaccaactgatttattctacgcagcc 3823528  T
Q  146 ttactttg-nnnnnnnacaaaagaggttgttctaaggaatttgtgacctttcaataacgtgacaacaactttac 218  Q
    |||| |||        ||||| ||||||||| |||||||||||| |||||||||| | ||||||||||||||||    
T  3823529 ttaccttgttttttttacaaatgaggttgttttaaggaatttgtaacctttcaatcatgtgacaacaactttac 3823602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 5648352 - 5648308
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  5648352 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 5648308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 9832354 - 9832398
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  9832354 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 9832398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 20225076 - 20225032
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  20225076 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 20225032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 29207939 - 29207983
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  29207939 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 29207983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 30690217 - 30690261
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    ||||||||||||||||||||||| ||||||| || | ||||||||    
T  30690217 tccgggaaggggtcccaccaattggtgtattgtatgcagccttac 30690261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 47444051 - 47444007
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  47444051 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 47444007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 47528571 - 47528615
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  47528571 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 47528615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 48598866 - 48598910
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  48598866 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 48598910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 8897805 - 8897849
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||||||||||||    
T  8897805 tccgggaaggggtcccaccatttggtgtattgtacgtagccttac 8897849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 45071363 - 45071314
Alignment:
Q  100 caagatccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||| |||||||||||||||||||| || ||||||| |||| ||||||||    
T  45071363 caaggtccgggaaggggtcccaccatttggtgtattgtacgcagccttac 45071314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 12670291 - 12670335
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  12670291 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 12670335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 13160795 - 13160751
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  13160795 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 13160751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 29877188 - 29877144
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  29877188 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 29877144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 36720890 - 36720846
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  36720890 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 36720846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 7368490 - 7368446
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  7368490 tccgggaaggggtcccaccaattggtgtattgtacgcagccttac 7368446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 8170025 - 8170069
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  8170025 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 8170069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 24448984 - 24448940
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  24448984 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 24448940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 32703516 - 32703472
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  32703516 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 32703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 34154855 - 34154899
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  34154855 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 34154899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 25517209 - 25517251
Alignment:
Q  103 gatccgggaaggggtcccaccaatttgtgtattctacgtagcc 145  Q
    |||||||||||||||||||||| |||||||||| |||| ||||    
T  25517209 gatccgggaaggggtcccaccattttgtgtattgtacgcagcc 25517251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 22609886 - 22609837
Alignment:
Q  100 caagatccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||| |||||||||||||||||||| || ||||||| |||| ||||||||    
T  22609886 caaggtccgggaaggggtcccaccatttggtgtattgtacgcagccttac 22609837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 15797336 - 15797292
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  15797336 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 15797292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 16735556 - 16735512
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  16735556 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 16735512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 22122958 - 22123002
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  22122958 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 22123002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 26573243 - 26573199
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    ||||||| ||||||||||||||| ||||||| |||| ||||||||    
T  26573243 tccgggatggggtcccaccaattggtgtattgtacgcagccttac 26573199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 34771405 - 34771449
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  34771405 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 34771449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 40272853 - 40272897
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  40272853 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 40272897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 47624157 - 47624113
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  47624157 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 47624113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 54484807 - 54484763
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  54484807 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 54484763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 24174 - 24218
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  24174 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 24218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 48675 - 48719
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  48675 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 48719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 7879732 - 7879688
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  7879732 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 7879688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 10693114 - 10693158
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  10693114 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 10693158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 18747577 - 18747537
Alignment:
Q  109 ggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
T  18747577 ggaaggggtcccaccaattggtgtattatacgcagccttac 18747537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 19265908 - 19265864
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  19265908 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 19265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 21172050 - 21172094
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  21172050 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 21172094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 42391141 - 42391185
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  42391141 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 42391185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 48735163 - 48735207
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  48735163 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 48735207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 1347056 - 1347012
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  1347056 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 1347012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 1354798 - 1354842
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  1354798 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 1354842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 8455357 - 8455401
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  8455357 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 8455401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 9671273 - 9671229
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  9671273 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 9671229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 10546257 - 10546213
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  10546257 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 10546213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 22371148 - 22371104
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  22371148 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 22371104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 23145739 - 23145783
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||| |||||||||||||| ||||||| |||| ||||||||    
T  23145739 tccgggaaagggtcccaccaattggtgtattgtacgcagccttac 23145783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 23397858 - 23397814
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||| ||||||||||||||| || ||||||| |||||||||||||    
T  23397858 tccgagaaggggtcccaccatttggtgtattgtacgtagccttac 23397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 23557529 - 23557573
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||| |||||||||||||| ||||||| |||| ||||||||    
T  23557529 tccgggaaagggtcccaccaattggtgtattgtacgcagccttac 23557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 24890505 - 24890461
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    ||||||||||||||||||||||| ||||||| || | ||||||||    
T  24890505 tccgggaaggggtcccaccaattggtgtattgtatgcagccttac 24890461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 36871586 - 36871542
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  36871586 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 36871542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 4349755 - 4349711
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  4349755 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 4349711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 34725139 - 34725183
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  34725139 tccgggaaggggtcccaccatttagtgtattgtacgcagccttac 34725183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 35253228 - 35253272
Alignment:
Q  105 tccgggaaggggtcccaccaatttgtgtattctacgtagccttac 149  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  35253228 tccgggaaggggtcccaccatttggtgtattgtacgcagccttac 35253272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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